Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060323.seq
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)               85   4e-17
SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                   53   3e-07
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         28   6.2  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            28   6.2  
SB_49295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 39/67 (58%), Positives = 50/67 (74%)
 Frame = +1

Query: 310 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 489
           G FRAAVPSGASTG++EALELRD   S++ GKGV  A+ N+N +I P L   N++VT Q 
Sbjct: 40  GTFRAAVPSGASTGIYEALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQE 99

Query: 490 EIDELML 510
           +ID +ML
Sbjct: 100 DIDNMML 106


>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +1

Query: 601 KMFPLYKHLADLAGNNDIVLPVPAFNVING 690
           K  PLYK++A LAGNN ++LPVPAFNVING
Sbjct: 24  KGVPLYKYIAGLAGNNQVILPVPAFNVING 53


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 507 HEFINLSLLGYFKVGFGKFRSNEFID-IFDCGQNSLAMIFTLDVISQF--KSFMNTSGGT 337
           H F    + GY + GF KFRS + +D + D  + +      +D   +F  K F +  GGT
Sbjct: 650 HSFWFNDVCGYNQKGFRKFRSEQELDELLDKIEKTQDPQRRVDKTFKFASKEFFSMEGGT 709

Query: 336 R 334
           R
Sbjct: 710 R 710


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 379 NIKSEYHGKGVLTAIKNINELIAPELTK--ANLEVTQQRE 492
           N+K+E+ G+    AI ++ EL+ P   +    L++TQ R+
Sbjct: 219 NLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQ 258


>SB_49295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 348 SGGTRGYSCPEQTKLCYQINFHCRVA 271
           SGGT G SCP+ T L  Q   + R A
Sbjct: 135 SGGTAGLSCPQNTVLDIQWALYARPA 160


>SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 563 SFPSCC*GWCCQEKCFRCTST 625
           +F +C   WCC+ KC  C  T
Sbjct: 226 TFCNCKFHWCCKVKCMTCKET 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,091,489
Number of Sequences: 59808
Number of extensions: 309157
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)