Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060323.seq
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68318-8|CAH10783.1| 465|Caenorhabditis elegans Hypothetical pr... 156 2e-38
Z68318-2|CAA92692.1| 434|Caenorhabditis elegans Hypothetical pr... 156 2e-38
Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical pr... 131 4e-31
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 29 3.2
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 28 5.5
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec... 28 5.5
AL032627-2|CAB63353.2| 521|Caenorhabditis elegans Hypothetical ... 28 5.5
AF036693-2|AAO61430.1| 113|Caenorhabditis elegans Hypothetical ... 28 5.5
>Z68318-8|CAH10783.1| 465|Caenorhabditis elegans Hypothetical
protein T21B10.2c protein.
Length = 465
Score = 156 bits (378), Expect = 2e-38
Identities = 80/145 (55%), Positives = 95/145 (65%)
Frame = +1
Query: 256 IFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNIN 435
I+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD K+ + GKGVL A+ NIN
Sbjct: 42 IYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGVLKAVSNIN 101
Query: 436 ELIAPELTKANLEVTQQREIDELMLSWMALRTNPNWVXXXXXXXXXXXXXXXXPRKMFPL 615
E IAP L +VT Q++ID+ M++ N K PL
Sbjct: 102 EKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVAKAGAVHKGLPL 161
Query: 616 YKHLADLAGNNDIVLPVPAFNVING 690
YK++A+LAG +VLPVPAFNVING
Sbjct: 162 YKYIAELAGTGKVVLPVPAFNVING 186
>Z68318-2|CAA92692.1| 434|Caenorhabditis elegans Hypothetical
protein T21B10.2a protein.
Length = 434
Score = 156 bits (378), Expect = 2e-38
Identities = 80/145 (55%), Positives = 95/145 (65%)
Frame = +1
Query: 256 IFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNIN 435
I+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD K+ + GKGVL A+ NIN
Sbjct: 11 IYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGVLKAVSNIN 70
Query: 436 ELIAPELTKANLEVTQQREIDELMLSWMALRTNPNWVXXXXXXXXXXXXXXXXPRKMFPL 615
E IAP L +VT Q++ID+ M++ N K PL
Sbjct: 71 EKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVAKAGAVHKGLPL 130
Query: 616 YKHLADLAGNNDIVLPVPAFNVING 690
YK++A+LAG +VLPVPAFNVING
Sbjct: 131 YKYIAELAGTGKVVLPVPAFNVING 155
>Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical
protein T21B10.2b protein.
Length = 337
Score = 131 bits (317), Expect = 4e-31
Identities = 69/133 (51%), Positives = 83/133 (62%)
Frame = +1
Query: 256 IFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNIN 435
I+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD K+ + GKGVL A+ NIN
Sbjct: 11 IYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGVLKAVSNIN 70
Query: 436 ELIAPELTKANLEVTQQREIDELMLSWMALRTNPNWVXXXXXXXXXXXXXXXXPRKMFPL 615
E IAP L +VT Q++ID+ M++ N K PL
Sbjct: 71 EKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVAKAGAVHKGLPL 130
Query: 616 YKHLADLAGNNDI 654
YK++A+LAG I
Sbjct: 131 YKYIAELAGTGKI 143
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 41 KKIFSSRNYHDCTTYV*P*PAHLIRLALAIEVKVI 145
+ +F RN H C V P PA ++ LA+E +V+
Sbjct: 1137 RSVFDKRNAHPCFPGVPPPPALYEKVVLAVEEEVV 1171
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
protein C29E6.2 protein.
Length = 1193
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 313 LFRAAVPSGASTGVHEALELRDNIKSEYHGK--GVLTAIKNINELIAPELTKANLEVTQQ 486
L AA+ S S +H ++L+ ++ +E K +L A + ++ I EL KAN VT++
Sbjct: 160 LHYAAMKSNFSA-LHALIKLKADVDAEDDNKMTPLLLACVHGSQEIIQELIKANSNVTKR 218
Query: 487 REIDELMLSWMALRTNPNWV 546
+ + +ALR P ++
Sbjct: 219 DQRLNTVFHIVALRGEPEYL 238
>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
receptor potential subfamilyA-1 protein.
Length = 1206
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 313 LFRAAVPSGASTGVHEALELRDNIKSEYHGK--GVLTAIKNINELIAPELTKANLEVTQQ 486
L AA+ S S +H ++L+ ++ +E K +L A + ++ I EL KAN VT++
Sbjct: 178 LHYAAMKSNFSA-LHALIKLKADVDAEDDNKMTPLLLACVHGSQEIIQELIKANSNVTKR 236
Query: 487 REIDELMLSWMALRTNPNWV 546
+ + +ALR P ++
Sbjct: 237 DQRLNTVFHIVALRGEPEYL 256
>AL032627-2|CAB63353.2| 521|Caenorhabditis elegans Hypothetical
protein Y41C4A.2 protein.
Length = 521
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 161 YPQSIQEIFLQYPXKSISSVLKMVIKSIKARQSLTLVATLQWKLIW*QSLVCSGQLYPLV 340
+P+ + I + S SS +K + K+++ +S L WK + L+C P V
Sbjct: 359 FPKLVARISKRAAVISQSSNMKEMCKNLEDIESYKLKFIEYWKSLGVDVLICPAFCIPAV 418
Query: 341 PPLVFMKLLN 370
P +L+N
Sbjct: 419 PEKYLPELVN 428
>AF036693-2|AAO61430.1| 113|Caenorhabditis elegans Hypothetical
protein C49A9.10 protein.
Length = 113
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 584 GWCCQEKCFRCTSTWLIWLEIMILFY 661
G CCQE C C WLI+ + ++ +Y
Sbjct: 34 GLCCQEGCESC--VWLIYAQELLDYY 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,695,149
Number of Sequences: 27780
Number of extensions: 242545
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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