Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060323.seq
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 94  LTGASHSISVSNRSKSNRIN 153
           + G  +S+ + N SKS+RIN
Sbjct: 478 IIGKDYSLPMVNHSKSSRIN 497


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 309 WFVPGSCTLWCLHW 350
           W+VP    +W L+W
Sbjct: 596 WYVPSLDQVWILNW 609


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 77  YNHDNSYLKIFFY 39
           YN+DN+Y K  +Y
Sbjct: 96  YNNDNNYNKKLYY 108


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 106 SHSISVSNRSKSNRINPLIPSIDT 177
           S  ++V  + + N I P++  IDT
Sbjct: 327 SSELAVRIQRQENNIRPMVKQIDT 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,624
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)