Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060322.seq
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    26   0.25 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.6  

>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 507 LETVYDMISXFQPELHQEVGPKFHTDQSLTSHNQTVRPCMPEIQV 373
           L   Y   + + P+LH   GP  H        + T   C P++QV
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCNPQLQV 119


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -3

Query: 495 YDMISXFQPELHQEVGPKFHTDQSLTSHNQTVRPCMPEIQVAPIQIL*QVSQRNFSRFCK 316
           YD      P  H++    FH   + T  N T +     +++    +L Q  Q +   FC 
Sbjct: 432 YDFYKMNHPVYHKDPHYGFHNVTNTTLQNLTPQLNYISMKLQSFPLLSQRHQIDAKMFCN 491

Query: 315 AAIV 304
            + V
Sbjct: 492 ESSV 495


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 507 LETVYDMISXFQPELHQEVGPKFH 436
           L   Y   + + P+LH   GP  H
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIH 98


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 507 LETVYDMISXFQPELHQEVGPKFH 436
           L   Y   + + P+LH   GP  H
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIH 98


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 507 LETVYDMISXFQPELHQEVGPKFH 436
           L   Y   + + P+LH   GP  H
Sbjct: 75  LSNGYGYGNYYHPQLHSHHGPPIH 98


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 228 KTKRRSCKIAERCQCPNCVSKQLIIEQSQPYKSVKNFFVKLA 353
           K    S K+  R   PN   K++ + +  P +S     VKL+
Sbjct: 182 KANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLS 223


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 228 KTKRRSCKIAERCQCPNCVSKQLIIEQSQPYKSVKNFFVKLA 353
           K    S K+  R   PN   K++ + +  P +S     VKL+
Sbjct: 130 KANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLS 171


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 228 KTKRRSCKIAERCQCPNCVSKQLIIEQSQPYKSVKNFFVKLA 353
           K    S K+  R   PN   K++ + +  P +S     VKL+
Sbjct: 313 KANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLS 354


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,726
Number of Sequences: 336
Number of extensions: 3593
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)