Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060322.seq
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35) 50 2e-06
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.095
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 34 0.095
SB_3383| Best HMM Match : DnaJ (HMM E-Value=3.8e-40) 34 0.095
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37) 33 0.17
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 31 0.67
SB_31923| Best HMM Match : DnaJ (HMM E-Value=2.8e-38) 31 0.89
SB_16477| Best HMM Match : DnaJ (HMM E-Value=8.1e-33) 30 2.0
SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.6
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_24444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_2842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37) 28 8.3
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_16146| Best HMM Match : DnaJ (HMM E-Value=2.7e-37) 28 8.3
>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1671
Score = 50.0 bits (114), Expect = 2e-06
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +1
Query: 577 GTXWYRSNRFSGEQVLFDTTRMYF*XCHKTPSMPLKR 687
GT WY+S ++S +Q+L DTT++Y+ HKTP+M +KR
Sbjct: 1353 GTWWYKSIQYSCDQILLDTTQLYYYFFHKTPAMQIKR 1389
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +3
Query: 354 IVSGWVLLGFLAYKVSQFDYEMSNFDPYEILGLPPGATQAEIXKSYRKQS 503
IV W++ AYK+SQFD + + +DPY +L + GA+ AEI + YR S
Sbjct: 1223 IVILWIVFFAGAYKISQFDRDFAEYDPYAVLEIDRGASVAEIRRQYRSLS 1272
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 512 HPDKETGDEKAFMRAHKGH 568
HPDKETGD + FMR K +
Sbjct: 1276 HPDKETGDPRKFMRIAKAY 1294
>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 966
Score = 34.3 bits (75), Expect = 0.095
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 435 YEILGLPPGATQAEIXKSYRKQSL 506
Y+IL +PP AT EI KSYRK +L
Sbjct: 67 YDILNVPPTATATEIKKSYRKLAL 90
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 34.3 bits (75), Expect = 0.095
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 429 DPYEILGLPPGATQAEIXKSYRKQSLV 509
DPY ILG+PP A+ +I + YRK +++
Sbjct: 800 DPYSILGVPPEASDDDIKRQYRKLAVL 826
>SB_3383| Best HMM Match : DnaJ (HMM E-Value=3.8e-40)
Length = 250
Score = 34.3 bits (75), Expect = 0.095
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 429 DPYEILGLPPGATQAEIXKSYRKQSLVCILTKKLVTRRLS*ELTKGIPGWHXVVSFK 599
D YE+LG+P A++ ++ K+YR+Q+L K R + E K + + V+S K
Sbjct: 4 DYYEVLGVPRSASEEDVKKAYRRQALRWHPDKNPTNREHAEEKFKKLSEAYEVLSDK 60
>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
Length = 399
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 429 DPYEILGLPPGATQAEIXKSYRKQSL 506
D Y+ILGL AT A+I K YRK SL
Sbjct: 4 DYYDILGLTRSATDADIKKEYRKLSL 29
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 429 DPYEILGLPPGATQAEIXKSY 491
D Y+ILG+PP A Q EI K+Y
Sbjct: 59 DYYKILGVPPNANQKEIKKAY 79
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 31.5 bits (68), Expect = 0.67
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 342 VKLAIVSGWVLL-GFLAYKVSQFDY-EMSNFDPYEILGLPPGATQAEIXKSYRKQSL 506
V +VSG+V + + + + FD E + Y++LG+ ATQAEI ++YR+ SL
Sbjct: 2452 VLFILVSGFVCVHAWDSVDLELFDIVEEVKDNFYQVLGVETTATQAEIRRAYRRISL 2508
>SB_31923| Best HMM Match : DnaJ (HMM E-Value=2.8e-38)
Length = 161
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 435 YEILGLPPGATQAEIXKSYRKQSLV 509
Y ILG+P A+ +I K+YR+Q+L+
Sbjct: 6 YAILGVPRNASDDDIKKAYRRQALI 30
>SB_16477| Best HMM Match : DnaJ (HMM E-Value=8.1e-33)
Length = 138
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 429 DPYEILGLPPGATQAEIXKSYRKQSL 506
D Y+IL +P A++ +I KSYRK +L
Sbjct: 3 DYYDILEVPRSASEQDIKKSYRKLAL 28
>SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 576
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 429 DPYEILGLPPGATQAEIXKSYRKQSL 506
D Y+ILG+P A+ +I K++RK ++
Sbjct: 26 DYYQILGVPRNASDKQIKKAFRKMAV 51
>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 435 YEILGLPPGATQAEIXKSYRKQSL 506
Y +LGL ATQ EI K Y+K ++
Sbjct: 796 YRVLGLTEDATQEEIKKRYKKLAM 819
>SB_24444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 429 DPYEILGLPPGATQAEIXKSYRKQSLV 509
D YE LG+ GAT+ +I ++Y+K +++
Sbjct: 143 DHYERLGIQQGATKDDINRAYKKLAVL 169
>SB_2842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 435 YEILGLPPGATQAEIXKSYRKQSL 506
Y++LG+ A+++EI ++YRK SL
Sbjct: 17 YDVLGVSKTASESEIKRAYRKISL 40
>SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)
Length = 386
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 435 YEILGLPPGATQAEIXKSYRK 497
Y++LG+P A+ +I K+YRK
Sbjct: 7 YDLLGVPQNASDNDIKKAYRK 27
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 183 SCINISTSYILLLA*KTKRR-SCKIAERCQCPNCVSKQLIIEQSQ 314
+C++ + S+ +L+ T+ + +IA R NC+SKQ I ++SQ
Sbjct: 121 ACLDNNHSHFILVDDGTEGKYGGEIALRASLENCISKQRISQKSQ 165
>SB_16146| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)
Length = 79
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 435 YEILGLPPGATQAEIXKSYRK 497
Y++LG+P A+ +I K+YRK
Sbjct: 7 YDLLGVPQNASDNDIKKAYRK 27
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,755,569
Number of Sequences: 59808
Number of extensions: 413856
Number of successful extensions: 860
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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