Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060321.seq
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    30   0.35 
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    28   1.4  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    27   2.4  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   7.5  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    25   9.9  
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    25   9.9  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   9.9  

>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = -3

Query: 511 LQIIFPNIIISLLLYYV------IQLCIFSSLHCTVFLKLSFFYNLNHSVRPLDAIKHIS 350
           +Q ++    + L +Y+V      I  C+F +LHC V +   F Y  +H +  +  I+ + 
Sbjct: 178 IQTLWQGFYMVLAVYWVKHRDFPIVQCVFFTLHCAVLIMKQFSY--SHHMGYISEIRILH 235

Query: 349 FPLSNLCCRVRMCL*ISDK 293
                L   VR CL  ++K
Sbjct: 236 NEYEKLLKFVRECLNSTEK 254



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 508 QIIFPNIIISLLLYYVIQLCIFSSL-HCTVFLKLSFF 401
           +I+FP II+ L+++Y+I  CI ++    T F    F+
Sbjct: 383 KIMFPAIILYLIMFYLIFDCILNAFAEITKFADRGFY 419


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 71  GPLNMSHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQ 250
           GP   SH  L++    RP +  Y++ +   D +   C I +E     +PNT ++T D+ Q
Sbjct: 581 GP-QFSHRPLVLGSNVRPVSERYNE-QIAEDVL---CDILDEIDYAEDPNTSSVTIDVPQ 635


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -3

Query: 475 LLYYVIQLCIFSSLH-CTVFLKLSFFYNLNHSVRPLDAIKHISFPLS--NLCCRVRMCL* 305
           +L  V+  C F     C +   LSF        R +DAI + S PL+   LC  +   + 
Sbjct: 205 VLLVVLYECAFGIFFGCVIGYLLSFILKHAQKYRLIDAISYYSLPLAIPLLCSGIGTIIG 264

Query: 304 ISDKLNS 284
           + D L S
Sbjct: 265 VDDLLMS 271


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 666 SNIGLNNVHTLPTACMWNGLIVFTL 592
           S IG  NV  +   CMW G I+FTL
Sbjct: 509 SIIGYGNVMWIFCGCMWGG-ILFTL 532


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 660 IGLNNVHTLPTACMWNGLIVFTL 592
           IG  NV  +   CMW G I+FTL
Sbjct: 510 IGYGNVMWIFCGCMWGG-ILFTL 531


>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 152 SVNDCMEGVCKIYEEHLKRRNP 217
           S+   ++ +CK+Y + LK +NP
Sbjct: 69  SIGKVLDYICKVYFDSLKLQNP 90


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 563 ALLFM*NHLHNVKTISPFHMQAVGNVCTLFKP 658
           ALL     L   KTISP H Q+   + T++ P
Sbjct: 228 ALLRSVKSLKVYKTISPLHTQSTDKLYTIWTP 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,584
Number of Sequences: 5004
Number of extensions: 58968
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)