Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060321.seq
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0584 - 24082867-24082960,24083071-24083191,24083693-240837...    64   1e-10
09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    30   1.5  
05_02_0038 + 5890103-5890522,5891442-5891515,5891605-5891680,589...    29   4.4  
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    29   4.4  

>02_04_0584 -
           24082867-24082960,24083071-24083191,24083693-24083786,
           24084675-24084725
          Length = 119

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +2

Query: 89  HTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQL 253
           HTI+L+QP     +RT+ DY S+N  ++G+C +YE  ++  NP  P ITYDI+ L
Sbjct: 21  HTIILMQPSQNRASRTFMDYNSINHALDGLCGLYERKIRDINPMVPNITYDITDL 75



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +1

Query: 244 ITTL-DFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 378
           IT L +F+D LAD+S LVY  S   + PY++ WIK+K++  L++ A
Sbjct: 72  ITDLYNFIDGLADISALVYDHSIQAFLPYDRQWIKQKLFQHLKKLA 117


>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 204 KGETLIHPLSRTIYHNSRFCRPVGRSELFSLSEIYKHIR-TLQQRLDKGKDIC 359
           KG TL+ P    +  N R C   G S + S  E+ KH+  T         D+C
Sbjct: 68  KGYTLVEPAREQLNQNKRSCMQDGCSYMGSYGELCKHMEATFIPEFTARYDLC 120


>05_02_0038 +
           5890103-5890522,5891442-5891515,5891605-5891680,
           5891892-5891959,5892189-5892312,5892714-5892812,
           5893576-5893677,5893759-5893895,5894068-5894149,
           5894668-5894730,5895680-5895727,5895833-5895895,
           5896055-5896108,5896190-5896294
          Length = 504

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 508 QIIFPNIIISLLLYYVIQLCIFSSLHCTVFLKLSFFYNLNHSVRPL 371
           +I++P ++I      V+   +   + C V+LKL  F + NH +R L
Sbjct: 203 EIVYPVLVILKCDSAVLSGFLLIFIACIVWLKLVSFAHTNHDIRQL 248


>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 524 SLKSLTDNFSKHNNFSLTVLCYTTMYF 444
           S+  L   ++ HN   L+ LCYT MYF
Sbjct: 8   SMGDLWRRYAPHNLMILSQLCYTLMYF 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,512,964
Number of Sequences: 37544
Number of extensions: 319939
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)