Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060321.seq
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13923| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_33278| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_13923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 223 THYHVRY--ITTLDFVDQLADLSCLVYQKSTNTYAPYNKDWIK 345
           T Y +R+  ++  DF DQ+A    L Y++  N Y  +N  + K
Sbjct: 269 TFYSIRFPLMSMKDFTDQVARSGYLTYEEVANMYIGFNSGFQK 311


>SB_33278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 925

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 220 YTHYHVRYITTLDFVDQLADLSCLVYQKSTNTYAP 324
           Y H   R +  +DFV  +ADL+C   QK    YAP
Sbjct: 648 YYHVENRSLALVDFVPWIADLAC-NGQKPYRPYAP 681


>SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 68  KGPLNMSHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPT 229
           K P N+ H  L  +    P TR+Y   +      EG      EH K R P TP+
Sbjct: 25  KAPFNVEH--LKARLPATPSTRSYDSLQ--RRAPEGTTVCNAEHPKARQPATPS 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,305,260
Number of Sequences: 59808
Number of extensions: 427041
Number of successful extensions: 940
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)