Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060321.seq
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical pr...    78   7e-15
Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical p...    64   1e-10
AL110477-1|CAB54325.1|  331|Caenorhabditis elegans Hypothetical ...    31   0.98 
Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical
           protein T21C9.4 protein.
          Length = 103

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 32/57 (56%), Positives = 45/57 (78%)
 Frame = +2

Query: 83  MSHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQL 253
           MSHTILL+QP    E+R++SDYE+  +C+EG+C++YEE+LK++ P    ITYDIS L
Sbjct: 1   MSHTILLLQPTDNIESRSWSDYENTTECLEGICRVYEEYLKKKVPAQNEITYDISHL 57



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 19/37 (51%), Positives = 26/37 (70%)
 Frame = +1

Query: 256 DFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLL 366
           +F+D L DLS LV   +T TY P+NK ++KE IY L+
Sbjct: 59  EFIDDLKDLSMLVLDNTTYTYVPHNKQYVKESIYKLM 95


>Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical
           protein F35G12.11 protein.
          Length = 113

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 25/56 (44%), Positives = 42/56 (75%)
 Frame = +2

Query: 86  SHTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQL 253
           SHT+LL+Q  PR ++RT+ DYESV D ++ +CK++E+ L ++  +   +TYD+SQ+
Sbjct: 5   SHTVLLIQTSPRLDSRTWGDYESVTDALDALCKMFEDFLSKK--SAAPVTYDVSQV 58



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 12/38 (31%), Positives = 27/38 (71%)
 Frame = +1

Query: 256 DFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLR 369
           +F+D+L+D+S +++ + T  Y    + WIK+++Y ++R
Sbjct: 60  EFLDKLSDVSMMIFNRETGQYIGRTRAWIKQQVYEMMR 97


>AL110477-1|CAB54325.1|  331|Caenorhabditis elegans Hypothetical
           protein Y113G7B.2 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 514 VLQIIFPNIIISLLLYYVIQLCIFSSLHCTVFLKLSFFYNLNHSVRPLDAIKHISFPLSN 335
           +LQI+ P +I+ L ++Y+   CI S  H   F  ++   N +H      A+  +  P  N
Sbjct: 244 ILQILIPFVIVFLPIFYIGVTCI-SEYHNQFFNNITIIINSSHGFFSTIAMIALHAPYRN 302


>Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.5 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = -3

Query: 514 VLQIIFPNIIISLLLYYVIQLCIFSSLHCTVFLKLSFFYNLNHSVRPLDAIKHISFPLSN 335
           +LQ++ P II+ L + Y+   CI S  H   F  L+     +H      A+  +  P   
Sbjct: 244 ILQLLIPFIIVFLPISYIGVTCI-SEYHNQFFNNLTLIIISSHGFFSTIAMIALHAPYRE 302

Query: 334 LCCRVRMCL-*ISDKLNSSDLPTGL 263
              ++  CL   S    SS  P  L
Sbjct: 303 FTQKIFPCLKRFSSSATSSTAPQSL 327


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -1

Query: 399 IILITLSG-RLTQ*NIYLFLYPIFVVGCVCVCRFLIN*TAQICQLVYKIESCD--ISYVI 229
           +I++ LSG R+ + N+    + IF +    V   LI      C L +K ES D  +S+++
Sbjct: 210 VIILKLSGGRVPEKNLLQMSFVIFFIDIFLVILTLIKAIIIACGLSFKSESTDEILSWIV 269

Query: 228 V 226
           +
Sbjct: 270 I 270


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -1

Query: 399 IILITLSG-RLTQ*NIYLFLYPIFVVGCVCVCRFLIN*TAQICQLVYKIESCD--ISYVI 229
           +I++ LSG R+ + N+    + IF +    V   LI      C L +K ES D  +S+++
Sbjct: 210 VIILKLSGGRVPEKNLLQMSFVIFFIDIFLVILTLIKAIIIACGLSFKSESTDEILSWIV 269

Query: 228 V 226
           +
Sbjct: 270 I 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,368,486
Number of Sequences: 27780
Number of extensions: 329020
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)