Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060321.seq
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10810.1 68418.m01256 enhancer of rudimentary protein, putati...    64   8e-11
At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) fa...    31   0.52 
At3g26040.1 68416.m03243 transferase family protein similar to d...    29   2.1  
At4g32350.1 68417.m04605 expressed protein contains Pfam profile...    27   8.5  

>At5g10810.1 68418.m01256 enhancer of rudimentary protein, putative
           identical to enhancer of rudimentary homolog SP:Q96319
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF01133 enhancer of rudimentary
          Length = 109

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 26/55 (47%), Positives = 37/55 (67%)
 Frame = +2

Query: 89  HTILLVQPGPRPETRTYSDYESVNDCMEGVCKIYEEHLKRRNPNTPTITYDISQL 253
           HTI+L+Q  P   TRT+ DY+S+   M+G+C +YE  LK  NP+   I+YDI+ L
Sbjct: 9   HTIILLQNSPSRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNISYDIADL 63



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = +1

Query: 256 DFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 378
           +F+D LADLS LVY  S + Y PY++ WIK+K +  L++ A
Sbjct: 65  NFIDGLADLSALVYDHSISAYLPYDRQWIKQKAFHHLKRIA 105


>At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 362

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 137 YSDYESVNDCMEGVCKIY 190
           +S Y+S NDC +G+C IY
Sbjct: 8   WSPYDSYNDCSQGICNIY 25


>At3g26040.1 68416.m03243 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034], alcohol
           acyltransferase [Fragaria x
           ananassa][GI:10121328][PMID:10810141]
          Length = 442

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 457 QLCIFSSLHCTVFLKLSFFYNLNHSVRPLDAIKHISFPLS 338
           +L +   L  T+F  + FFY+ N+S++P + ++ +   LS
Sbjct: 25  KLSLLEQLGPTIFGPMVFFYSANNSIKPTEQLQMLKKSLS 64


>At4g32350.1 68417.m04605 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 732

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 235 VRYITTLDFVDQLADLSCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAAGQSD 390
           +RY+ +LDFV+Q  D   +  Q ST    P   +  +E I  L+  A+G S+
Sbjct: 66  LRYLWSLDFVEQTCDF--VYKQLSTMQKTPECPEDCREAISSLMFAASGFSE 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,879
Number of Sequences: 28952
Number of extensions: 283890
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)