Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060320.seq
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 122 3e-29
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 122 3e-29
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 93 2e-20
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 60 2e-10
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 53 3e-08
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 50 2e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 40 2e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 31 0.11
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 31 0.11
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 31 0.11
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 30 0.26
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 2.4
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 7.3
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 7.3
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 9.6
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 122 bits (295), Expect = 3e-29
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Frame = +1
Query: 259 RCITIKSTAISMFFELEEKXLVFITNPDQREKSEXX-FLINLIDSXGHVDFSSEVTAALR 435
R +TIKSTAIS+F E+ + + D +E ++ FL+NLIDS GHVDFSSEVTAALR
Sbjct: 66 RGVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALR 120
Query: 436 VTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMDRXXXXXXXXXXXXYQTXQR 615
VTDGAL QTETVLR+A+ RI+P++ +NK+DR YQ R
Sbjct: 121 VTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFAR 180
Query: 616 IVENVNVLIATYND 657
+VE+VNV+I+TY D
Sbjct: 181 VVESVNVVISTYYD 194
Score = 68.1 bits (159), Expect = 1e-12
Identities = 31/42 (73%), Positives = 35/42 (83%)
Frame = +2
Query: 65 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV K
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQK 42
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 122 bits (295), Expect = 3e-29
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Frame = +1
Query: 259 RCITIKSTAISMFFELEEKXLVFITNPDQREKSEXX-FLINLIDSXGHVDFSSEVTAALR 435
R +TIKSTAIS+F E+ + + D +E ++ FL+NLIDS GHVDFSSEVTAALR
Sbjct: 66 RGVTIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALR 120
Query: 436 VTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMDRXXXXXXXXXXXXYQTXQR 615
VTDGAL QTETVLR+A+ RI+P++ +NK+DR YQ R
Sbjct: 121 VTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFAR 180
Query: 616 IVENVNVLIATYND 657
+VE+VNV+I+TY D
Sbjct: 181 VVESVNVVISTYYD 194
Score = 68.1 bits (159), Expect = 1e-12
Identities = 31/42 (73%), Positives = 35/42 (83%)
Frame = +2
Query: 65 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV K
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQK 42
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 93.5 bits (222), Expect = 2e-20
Identities = 58/131 (44%), Positives = 77/131 (58%)
Frame = +1
Query: 259 RCITIKSTAISMFFELEEKXLVFITNPDQREKSEXXFLINLIDSXGHVDFSSEVTAALRV 438
R IT+KS+AIS+FF++ I+ D++ + E +LINLIDS GHVDFSSEV++A R+
Sbjct: 66 RGITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRL 117
Query: 439 TDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMDRXXXXXXXXXXXXYQTXQRI 618
DGA QT TVLR+A RIK IL +NKMDR + R+
Sbjct: 118 CDGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRL 177
Query: 619 VENVNVLIATY 651
VE VN +I T+
Sbjct: 178 VEQVNAVIGTF 188
Score = 42.7 bits (96), Expect = 4e-05
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = +2
Query: 83 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVS 187
+++ + + NIRN +++AHVDHGK+TL DSL++
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLA 41
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 60.5 bits (140), Expect = 2e-10
Identities = 38/99 (38%), Positives = 51/99 (51%)
Frame = +1
Query: 265 ITIKSTAISMFFELEEKXLVFITNPDQREKSEXXFLINLIDSXGHVDFSSEVTAALRVTD 444
ITI+S A +E + N Q+ E + IN+ID+ GH+DF+ EV ALRV D
Sbjct: 113 ITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLD 170
Query: 445 GALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMDR 561
GA+ QT TV R+ + I F+NKMDR
Sbjct: 171 GAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDR 209
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 71 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLV 184
N + E DKKR IRN+ + AH+D GK+T T+ ++
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVL 80
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 53.2 bits (122), Expect = 3e-08
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +1
Query: 373 INLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNK 552
INLID+ GH DF+ EV ++ V DGA+ QT+ V ++A I ++F+NK
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQATKRGIPKVIFVNK 154
Query: 553 MDR 561
MDR
Sbjct: 155 MDR 157
Score = 33.9 bits (74), Expect = 0.021
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +2
Query: 116 NIRNMSVIAHVDHGKSTLTDSLV 184
+IRN+ +IAH+D GK+TLT+ ++
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKML 49
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 50.4 bits (115), Expect = 2e-07
Identities = 24/89 (26%), Positives = 40/89 (44%)
Frame = +1
Query: 367 FLINLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFM 546
F ID+ GHVDF EV A + ++DG + T +++ AI + +L +
Sbjct: 209 FAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAILHDMPIVLVL 268
Query: 547 NKMDRXXXXXXXXXXXXYQTXQRIVENVN 633
NK+DR Y + +++ VN
Sbjct: 269 NKVDRLILELRLPPNDAYHKLRHVIDEVN 297
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +1
Query: 367 FLINLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFM 546
+L+NLID+ GHVDF +EV +L +G + QT + A + + I +
Sbjct: 124 YLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNLVIIPVL 183
Query: 547 NKMD 558
NK+D
Sbjct: 184 NKVD 187
Score = 38.7 bits (86), Expect = 7e-04
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +2
Query: 89 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLV 184
+RG+ + +RN +VIAH+DHGKSTL+D ++
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCIL 79
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190
M K++ N+ VI HVD GKST T L+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYK 30
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190
M K++ N+ VI HVD GKST T L+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYK 30
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190
M K++ N+ VI HVD GKST T L+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYK 30
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 107 KKRNIRNMSVIAHVDHGKSTLTDSL 181
KK ++ N+ I HVDHGK+TLT ++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAI 73
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 382 IDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPI-LFMNKMD 558
+D GH D+ + DGA+ QT L A +K I +++NK+D
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMPQTREHLLLARQVGVKQIVVYINKVD 180
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 128 MSVIAHVDHGKSTLTDS 178
++++ HVDHGK+TL D+
Sbjct: 174 VTLMGHVDHGKTTLLDA 190
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 121 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 26
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 116 SASCPSSHGSRLP*NSPF*MVYDFCSIK 33
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 125 NMSVIAHVDHGKSTLTDSL 181
N+ I HV HGKST+ ++
Sbjct: 25 NIGTIGHVAHGKSTVVKAI 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,914
Number of Sequences: 5004
Number of extensions: 40773
Number of successful extensions: 98
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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