Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060320.seq
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 157 6e-39
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 47 2e-05
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 43 3e-04
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 30 1.4
SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 7.7
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 157 bits (382), Expect = 6e-39
Identities = 82/133 (61%), Positives = 94/133 (70%)
Frame = +1
Query: 259 RCITIKSTAISMFFELEEKXLVFITNPDQREKSEXXFLINLIDSXGHVDFSSEVTAALRV 438
RCITIKSTAIS+++EL E +IT P ++ E FLINLIDS GHVDFSSEVTAALRV
Sbjct: 65 RCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRV 122
Query: 439 TDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMDRXXXXXXXXXXXXYQTXQRI 618
TDGAL QTETVLR+AIA RIKP+LFMNKMDR YQT RI
Sbjct: 123 TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARI 182
Query: 619 VENVNVLIATYND 657
VE++NV+IATY+D
Sbjct: 183 VESINVIIATYSD 195
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +2
Query: 68 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSK 41
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +1
Query: 415 EVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMDRXXXXXXXXXXX 594
+V+ A+R+ DGAL QT VLR+A I+P L +NK+DR
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSE 152
Query: 595 XYQTXQRIVENVNVLIAT 648
+ Q+I+E VN + T
Sbjct: 153 AFIHLQQILEQVNAITGT 170
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +1
Query: 379 LIDSXGHVD--FSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNK 552
L+ S G + + +V+ A+R+ DGAL QT VLR+A I+P L +NK
Sbjct: 9 LVASNGIISSRLAGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNK 68
Query: 553 MDRXXXXXXXXXXXXYQTXQRIVENVNVLI 642
+DR + Q+I+E V+ +
Sbjct: 69 IDRLITELKYSPSEAFIHLQQILEQVSTAV 98
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Frame = +1
Query: 271 IKSTAISMFFELEEKXLVFITNP----DQREKSEXXFLINLIDSXGHVDFSSEVTAALRV 438
IK A S F E+E + + + + R+K IN++D+ GH DF+ + L
Sbjct: 48 IKKGATSDFMEIERQRGISVATSVLAFNYRDKK-----INILDTPGHKDFAEDTFRTLTA 102
Query: 439 TDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMDR 561
D + QTE ++ I I+F+NKMDR
Sbjct: 103 VDSVIVVIDVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDR 143
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 104 DKKRNIRNMSVIAHVDHGKSTLTDSLV 184
D+ + R +I+H D GK+TLT+ L+
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLL 31
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 119 IRNMSVIAHVDHGKSTLTDSLV 184
+RN S++AHVDHGKSTL D L+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLL 1962
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 382 IDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMD 558
+ + GHVDFS EV+ +L G + QT + A + I +NK+D
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKID 2049
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 373 INLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNK 552
I ID+ GH F+S VTD + QT +R A+ ++ I+ +NK
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVPLIVAINK 137
Query: 553 MDR 561
+D+
Sbjct: 138 IDK 140
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 128 MSVIAHVDHGKSTLTDSL 181
++++ HVDHGK+TL D+L
Sbjct: 31 VTIMGHVDHGKTTLLDAL 48
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 31.1 bits (67), Expect = 0.83
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 65 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSL 181
+ N+ ++ + +MD IRN+++ H+ GK+ D L
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCL 150
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/56 (21%), Positives = 28/56 (50%)
Frame = +1
Query: 490 TETVLRRAIAXRIKPILFMNKMDRXXXXXXXXXXXXYQTXQRIVENVNVLIATYND 657
TE +L+ A+ + + +NK+DR Y + +++ VN L++ +++
Sbjct: 170 TERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSE 225
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190
M K++ N+ VI HVD GKST T L+ K
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYK 30
>SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 447 SPCXCXXCVWCVCTNR 494
SPC C+WC C+ R
Sbjct: 18 SPCALYFCIWCECSKR 33
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 373 INLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNK 552
I +D+ GH F++ +VTD + QT+ + A A + I +NK
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINK 199
Query: 553 MDR 561
+D+
Sbjct: 200 IDK 202
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,677,228
Number of Sequences: 59808
Number of extensions: 330224
Number of successful extensions: 812
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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