Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060320.seq
         (658 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    28   0.30 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   6.4  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   6.4  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   8.5  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 100 DGQEAEYPQHVCDRPRRSRQVNPHGLVGFQGRYHCWCXSRR 222
           D   A   QH+  RP+RS + NP       GR H  C SRR
Sbjct: 273 DENPAGAQQHLSHRPQRSTRKNP------AGRQHDRCDSRR 307


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 115 EYPQHVCDRPRRSRQVNPHGLVGFQG 192
           ++P HVC+R  R+  +N   +V   G
Sbjct: 350 QHPLHVCERFERASVINREEIVRKHG 375


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 159 SQPSRTRWFPRPVSLLVRXPERPVSLTRVRTXXP 260
           SQP  TR+ P P + +   P  P+    VR   P
Sbjct: 107 SQPPTTRFAPEPRAEVKFVPSVPLKTPPVRPLLP 140


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 386 SIKLIKKXFSLFSRWSGFVMNTKXFSSSSKNIEMAVDL 273
           +++L+KK  SL S W       +       N ++A+ L
Sbjct: 156 TVRLLKKPPSLDSEWKSSTSTIQLIEQLDSNKQLAIAL 193


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,540
Number of Sequences: 2352
Number of extensions: 10918
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)