BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060320.seq (658 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 158 4e-39 M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 155 3e-38 Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 68 5e-12 Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 68 5e-12 U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 65 5e-11 M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 65 5e-11 Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 56 2e-08 AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 50 1e-06 L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 47 1e-05 D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 31 0.95 D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 31 0.95 AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 31 0.95 U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 30 1.3 U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 30 1.3 U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 30 1.3 U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 30 1.3 U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 30 1.3 U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 30 1.3 AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 30 1.3 Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 29 2.2 U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.9 M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.9 Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 3.8 Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 3.8 DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 3.8 U41263-3|AAC24425.1| 361|Caenorhabditis elegans Hypothetical pr... 27 8.9 >Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein F25H5.4 protein. Length = 852 Score = 158 bits (383), Expect = 4e-39 Identities = 87/141 (61%), Positives = 96/141 (68%), Gaps = 8/141 (5%) Frame = +1 Query: 259 RCITIKSTAISMFFELEEKXLVFITNPDQREKSEXX--------FLINLIDSXGHVDFSS 414 RCITIKSTAIS+FFELE+K L F+ +Q E E FLINLIDS GHVDFSS Sbjct: 66 RCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSS 125 Query: 415 EVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMDRXXXXXXXXXXX 594 EVTAALRVTDGAL QTETVLR+AIA RIKP+LFMNKMDR Sbjct: 126 EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEE 185 Query: 595 XYQTXQRIVENVNVLIATYND 657 +QT QRIVEN+NV+IATY D Sbjct: 186 LFQTFQRIVENINVIIATYGD 206 Score = 84.2 bits (199), Expect = 7e-17 Identities = 39/42 (92%), Positives = 41/42 (97%) Frame = +2 Query: 65 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190 MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSK Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSK 42 >M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor protein. Length = 852 Score = 155 bits (376), Expect = 3e-38 Identities = 86/141 (60%), Positives = 95/141 (67%), Gaps = 8/141 (5%) Frame = +1 Query: 259 RCITIKSTAISMFFELEEKXLVFITNPDQREKSEXX--------FLINLIDSXGHVDFSS 414 RCITIKSTAIS+FFELE+K L F+ +Q E E FLINLIDS GHVDFSS Sbjct: 66 RCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSS 125 Query: 415 EVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMDRXXXXXXXXXXX 594 EVTAAL VTDGAL QTETVLR+AIA RIKP+LFMNKMDR Sbjct: 126 EVTAALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEE 185 Query: 595 XYQTXQRIVENVNVLIATYND 657 +QT QRIVEN+NV+IATY D Sbjct: 186 LFQTFQRIVENINVIIATYGD 206 Score = 84.2 bits (199), Expect = 7e-17 Identities = 39/42 (92%), Positives = 41/42 (97%) Frame = +2 Query: 65 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190 MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSK Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSK 42 >Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical protein K10C3.5b protein. Length = 705 Score = 68.1 bits (159), Expect = 5e-12 Identities = 39/92 (42%), Positives = 50/92 (54%) Frame = +1 Query: 370 LINLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMN 549 LINLIDS GHVDFS EVT+AL ++D AL QTE ++R+ I IL +N Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAMILVIN 143 Query: 550 KMDRXXXXXXXXXXXXYQTXQRIVENVNVLIA 645 K+DR YQ R++E VN I+ Sbjct: 144 KIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175 Score = 38.3 bits (85), Expect = 0.005 Identities = 15/24 (62%), Positives = 21/24 (87%) Frame = +2 Query: 116 NIRNMSVIAHVDHGKSTLTDSLVS 187 +IRN+ ++AHVDHGK++ DSLVS Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVS 42 >Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein K10C3.5a protein. Length = 894 Score = 68.1 bits (159), Expect = 5e-12 Identities = 39/92 (42%), Positives = 50/92 (54%) Frame = +1 Query: 370 LINLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMN 549 LINLIDS GHVDFS EVT+AL ++D AL QTE ++R+ I IL +N Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAMILVIN 143 Query: 550 KMDRXXXXXXXXXXXXYQTXQRIVENVNVLIA 645 K+DR YQ R++E VN I+ Sbjct: 144 KIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175 Score = 38.3 bits (85), Expect = 0.005 Identities = 15/24 (62%), Positives = 21/24 (87%) Frame = +2 Query: 116 NIRNMSVIAHVDHGKSTLTDSLVS 187 +IRN+ ++AHVDHGK++ DSLVS Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVS 42 >U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor protein 1 protein. Length = 974 Score = 64.9 bits (151), Expect = 5e-11 Identities = 36/110 (32%), Positives = 57/110 (51%) Frame = +1 Query: 322 VFITNPDQREKSEXXFLINLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 501 V I D R KS +L+N+ID+ GHV+FS E+TA+ R+ DG + TE Sbjct: 189 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 245 Query: 502 LRRAIAXRIKPILFMNKMDRXXXXXXXXXXXXYQTXQRIVENVNVLIATY 651 +R AI R+ L ++K+DR Y + I++ VN +++T+ Sbjct: 246 IRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTF 295 Score = 30.3 bits (65), Expect = 1.3 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +2 Query: 98 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190 +MD +RN+++ H+ HGK+T D L+ + Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQ 155 >M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. Length = 849 Score = 64.9 bits (151), Expect = 5e-11 Identities = 36/110 (32%), Positives = 57/110 (51%) Frame = +1 Query: 322 VFITNPDQREKSEXXFLINLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETV 501 V I D R KS +L+N+ID+ GHV+FS E+TA+ R+ DG + TE Sbjct: 64 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 120 Query: 502 LRRAIAXRIKPILFMNKMDRXXXXXXXXXXXXYQTXQRIVENVNVLIATY 651 +R AI R+ L ++K+DR Y + I++ VN +++T+ Sbjct: 121 IRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTF 170 Score = 29.5 bits (63), Expect = 2.2 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +2 Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190 MD +RN+++ H+ HGK+T D L+ + Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQ 30 >Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical protein F29C12.4 protein. Length = 750 Score = 56.4 bits (130), Expect = 2e-08 Identities = 30/63 (47%), Positives = 37/63 (58%) Frame = +1 Query: 373 INLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNK 552 IN+ID+ GHVDF+ EV ALRV DGA+ QT TV R+ + I F+NK Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFICFVNK 173 Query: 553 MDR 561 MDR Sbjct: 174 MDR 176 Score = 29.9 bits (64), Expect = 1.7 Identities = 10/22 (45%), Positives = 18/22 (81%) Frame = +2 Query: 119 IRNMSVIAHVDHGKSTLTDSLV 184 IRN+ + AH+D GK+T+T+ ++ Sbjct: 44 IRNIGISAHIDSGKTTVTERIL 65 >AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical protein Y119D3B.14 protein. Length = 689 Score = 50.4 bits (115), Expect = 1e-06 Identities = 26/63 (41%), Positives = 35/63 (55%) Frame = +1 Query: 373 INLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNK 552 INLID+ GHVDF EV +RV DG + QT TV R++ ++ F+NK Sbjct: 92 INLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQTLTVWRQSSKFKLPAHFFINK 151 Query: 553 MDR 561 MD+ Sbjct: 152 MDK 154 Score = 32.7 bits (71), Expect = 0.24 Identities = 13/22 (59%), Positives = 19/22 (86%) Frame = +2 Query: 119 IRNMSVIAHVDHGKSTLTDSLV 184 +RN+ VIAHVD GK+T+T+ L+ Sbjct: 25 LRNIGVIAHVDAGKTTVTERLL 46 >L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical protein ZK1236.1 protein. Length = 645 Score = 46.8 bits (106), Expect = 1e-05 Identities = 26/64 (40%), Positives = 35/64 (54%) Frame = +1 Query: 367 FLINLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFM 546 +L+NLID+ GHVDFS+EV+ +L V DG L QT A I+ I + Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQTIANFWLAFEKNIQIIPVI 161 Query: 547 NKMD 558 NK+D Sbjct: 162 NKID 165 Score = 38.3 bits (85), Expect = 0.005 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = +2 Query: 119 IRNMSVIAHVDHGKSTLTDSLV 184 IRN ++AHVDHGKSTL D L+ Sbjct: 42 IRNFGIVAHVDHGKSTLADRLL 63 >D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor Tu homologueprecursor protein. Length = 495 Score = 30.7 bits (66), Expect = 0.95 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 125 NMSVIAHVDHGKSTLTDSL 181 N+ I HVDHGK+TLT ++ Sbjct: 51 NVGTIGHVDHGKTTLTSAI 69 >D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor Tu homologueprecursor protein. Length = 496 Score = 30.7 bits (66), Expect = 0.95 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 125 NMSVIAHVDHGKSTLTDSL 181 N+ I HVDHGK+TLT ++ Sbjct: 52 NVGTIGHVDHGKTTLTSAI 70 >AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation factor (ef-tu), mitochondrialprotein 1 protein. Length = 496 Score = 30.7 bits (66), Expect = 0.95 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +2 Query: 125 NMSVIAHVDHGKSTLTDSL 181 N+ I HVDHGK+TLT ++ Sbjct: 52 NVGTIGHVDHGKTTLTSAI 70 >U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation factor (ef-tu), mitochondrialprotein 2 protein. Length = 439 Score = 30.3 bits (65), Expect = 1.3 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +2 Query: 125 NMSVIAHVDHGKSTLTDSL 181 N+ I H+DHGK+TLT ++ Sbjct: 47 NVGTIGHIDHGKTTLTSAI 65 >U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor protein 4, isoformc protein. Length = 267 Score = 30.3 bits (65), Expect = 1.3 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +2 Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190 M K++ N+ VI HVD GKST T L+ K Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30 >U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor protein 4, isoformb protein. Length = 77 Score = 30.3 bits (65), Expect = 1.3 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +2 Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190 M K++ N+ VI HVD GKST T L+ K Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30 >U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor protein 4, isoformd protein. Length = 429 Score = 30.3 bits (65), Expect = 1.3 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +2 Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190 M K++ N+ VI HVD GKST T L+ K Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30 >U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor protein 4, isoforma protein. Length = 463 Score = 30.3 bits (65), Expect = 1.3 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +2 Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190 M K++ N+ VI HVD GKST T L+ K Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30 >U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor protein 3 protein. Length = 463 Score = 30.3 bits (65), Expect = 1.3 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +2 Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190 M K++ N+ VI HVD GKST T L+ K Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30 >AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial elongation factorTu homologue protein. Length = 439 Score = 30.3 bits (65), Expect = 1.3 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +2 Query: 125 NMSVIAHVDHGKSTLTDSL 181 N+ I H+DHGK+TLT ++ Sbjct: 47 NVGTIGHIDHGKTTLTSAI 65 >Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical protein F46B6.6a protein. Length = 702 Score = 29.5 bits (63), Expect = 2.2 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +2 Query: 104 DKKRNIRNMSVIAHVDHGKSTLTDSL 181 D +R ++++ HVDHGK+TL D++ Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM 176 >U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant protein 1 protein. Length = 1852 Score = 29.1 bits (62), Expect = 2.9 Identities = 11/21 (52%), Positives = 11/21 (52%) Frame = -3 Query: 152 DRRGRSQTCCGYSASCPSSHG 90 DRRGR TC G CP G Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81 >M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans RNA polymeraseII largest subunit (ama-1 IV) gene, complete cds. ). Length = 1859 Score = 29.1 bits (62), Expect = 2.9 Identities = 11/21 (52%), Positives = 11/21 (52%) Frame = -3 Query: 152 DRRGRSQTCCGYSASCPSSHG 90 DRRGR TC G CP G Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81 >Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical protein F42H11.2 protein. Length = 732 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 Query: 67 GEFHGRRDPWDDGQEAEYPQHVCDR 141 GEFHG WD+ ++EY + DR Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690 >Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical protein F42H11.2 protein. Length = 732 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +1 Query: 67 GEFHGRRDPWDDGQEAEYPQHVCDR 141 GEFHG WD+ ++EY + DR Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690 >DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic translation initiationfactor eIF5B protein. Length = 1074 Score = 28.7 bits (61), Expect = 3.8 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = +1 Query: 379 LIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNKMD 558 +ID+ GH FS+ T + D A+ QT L+ I + ++ +NK+D Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIALNKID 612 Query: 559 R 561 R Sbjct: 613 R 613 >U41263-3|AAC24425.1| 361|Caenorhabditis elegans Hypothetical protein T19D12.5 protein. Length = 361 Score = 27.5 bits (58), Expect = 8.9 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -2 Query: 510 PTQYCFGLYTHTRHT 466 P CFG++ H+RHT Sbjct: 188 PANMCFGIFPHSRHT 202 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,855,343 Number of Sequences: 27780 Number of extensions: 242073 Number of successful extensions: 556 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 516 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 554 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1465835342 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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