Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060320.seq
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    30   0.017
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    30   0.017
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.030
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.48 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190
           M K++   N+ VI HVD GKST T  L+ K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYK 30


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 190
           M K++   N+ VI HVD GKST T  L+ K
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYK 30


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 128 MSVIAHVDHGKSTLTDSL 181
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = +1

Query: 373 INLIDSXGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRRAIAXRIKPILFMNK 552
           +  +D+ GH  F S       +TD  +           QT   +  A   ++  I+ +NK
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSIEMAKDAKVPIIVAINK 254

Query: 553 MDR 561
           +D+
Sbjct: 255 IDK 257


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 125 NMSVIAHVDHGKSTLTDSL 181
           N+  I HV HGKST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 467 VCLVCVYKPKQYCVGLLP 520
           V LVC+Y PK Y +   P
Sbjct: 750 VTLVCLYSPKIYIILFQP 767


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 467 VCLVCVYKPKQYCVGLLP 520
           V LVC+Y PK Y +   P
Sbjct: 840 VTLVCLYSPKIYIILFQP 857


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 106 VHHPTDLVYREIHH 65
           +HHP   + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 262 CITIKSTAISMFF 300
           C T+K +A+ M+F
Sbjct: 688 CATVKGSAVDMYF 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,605
Number of Sequences: 438
Number of extensions: 2800
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)