Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060318.seq
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    34   0.020
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    29   0.43 
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.3  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   9.2  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    25   9.2  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   9.2  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   9.2  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 505 GSXVKGIPDFWYHIFRDVXMLSEMMQXTDE 594
           G   KGIP+FW    ++V  LSEM+   DE
Sbjct: 158 GDDTKGIPEFWLTAMKNVLSLSEMITPEDE 187



 Score = 32.3 bits (70), Expect = 0.061
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 180 LHAEAMASLPPNVRRRIRALRTLQKSLSTLRPSFTVKYMH-SNANMKNFTSLFMK 341
           L +E ++ LP  V+RRI  LR LQK  S L   F  +      A  K +  +F +
Sbjct: 63  LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKR 117


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 517 KGIPDFWYHIFRDVXMLSEMMQXTDE 594
           KGIP+FW     +V ++ EM+   DE
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDE 189


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 195 MASLPPNVRRRIRALRTLQKSLSTLRPSFTVKYMHSNANMKNFTSLFM 338
           MA LPP    RI   +  + S  +L   F  KY+  N N+ N   +F+
Sbjct: 190 MAILPPMAALRILFYQYSKASTMSLTDDFYNKYVLENLNIINNLQIFL 237


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 123  HLLKSGVTRNEMIAAITNRLHAEAMASLP 209
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +1

Query: 4   HE-VRVKY*IWVPSNVLV--TTTHPKWSL 81
           HE +R+K  +WV +NVL+  T  H K++L
Sbjct: 532 HETIRIKSAVWVENNVLLYATLDHLKYAL 560


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 194 DGIPTPKCSSANPRLENSSEEFVDIEAKFYSEVH 295
           D   + K  S     ENSS+  +++E ++  +VH
Sbjct: 100 DSSLSSKLQSCKSACENSSQSLLNVEQQYAQQVH 133


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 171 TNRLHAEAMASLPPNVRRRIRALRTLQKSLSTLRPS 278
           ++++ + A+A LPP+++  I+    LQK   T  PS
Sbjct: 693 SSQISSSALAQLPPSMQSDIQQQLRLQKRSITEYPS 728


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 481 ILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 365
           ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 672 ILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,394
Number of Sequences: 5004
Number of extensions: 42218
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)