Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060318.seq
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 33 0.25
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 30 1.3
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 30 1.8
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 29 4.1
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 29 4.1
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 5.4
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 28 7.2
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 28 7.2
04_04_0699 - 27345243-27346199 27 9.5
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133 27 9.5
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 517 KGIPDFWYHIFRDVXMLSEMMQXTDEP 597
KG+PDFW + +LSE +Q DEP
Sbjct: 132 KGVPDFWLTAMKTNEVLSEEIQERDEP 158
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 183 HAEAMASLPPNVRRRIRALRTLQ 251
H + + +L PNVR+R+ LR +Q
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQ 69
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 517 KGIPDFWYHIFRDVXMLSEMMQXTDE 594
KG+P+FW + ++ +LSE +Q DE
Sbjct: 129 KGVPEFWLNAMKNHEILSEEIQERDE 154
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 508 SXVKGIPDFWYHIFRDVXMLSEMMQXTDE 594
S KG+PDFW + ++ +L+E + +DE
Sbjct: 205 SKEKGVPDFWLNAMKNNEILAEEIHESDE 233
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 407 DDTEEEELARAVQNAAITEGXEKKDDKAIXPPMDPM*RVSQTFGTTYSGMS 559
DD EEEE + V I EG + ++ +A P D F Y G S
Sbjct: 169 DDVEEEEEEQVVSRLDIFEGAKGREARAFLPDEDDEDDDVVVFDPEYDGYS 219
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 517 KGIPDFWYHIFRDVXMLSEMMQXTDE 594
KG+PDFW ++ +L+E + +DE
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDE 128
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 204 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 73
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 347 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAIT 460
A IV + EPN + N +D+T E+ A +NAA+T
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMT 719
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 514 VKGIPDFWYHIFRDVXMLSEMMQXTDE 594
+K IPDFW F ML E++ D+
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQ 98
>04_04_0699 - 27345243-27346199
Length = 318
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 315 SYLHSSACTSL*NLASMSTNSSEEFSRRGFADEHLGVGMPSLLHEGDL*WPLSFHY 148
S+ SS+CT+ +S S++ S + +RG A + MP + L WP+ Y
Sbjct: 244 SFSSSSSCTTTTTSSSTSSSGSPKRRKRGEA-AAASMSMPLVPPPSQLNWPVQAWY 298
>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
Length = 474
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 158 DSGHHKSPSCRSDGIPTPKCSSANPRLENSSEEFVD 265
D H K + R D +P PK S R+E+S +D
Sbjct: 37 DWRHKKERTARPDRLPLPKSSKKGLRIEDSPHPELD 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,460
Number of Sequences: 37544
Number of extensions: 286501
Number of successful extensions: 728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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