Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060318.seq
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   4.2  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   5.6  
SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   7.4  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   7.4  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                27   9.7  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 24/70 (34%), Positives = 30/70 (42%)
 Frame = +2

Query: 254 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELA 433
           E   +E KFY EVHA               R  I +G  EP D+EC   W  D E+E+ A
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEA 198

Query: 434 RAVQNAAITE 463
              +    TE
Sbjct: 199 EEKEEKEATE 208



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 517 KGIPDFWYHIFRDVXMLSEMMQXTDEP 597
           KGIP+FW    ++V +LSEM+Q  DEP
Sbjct: 238 KGIPEFWLTAMKNVELLSEMIQEHDEP 264


>SB_30442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 162 AAITNRLHAEAMASLPPNVRRRIRALRTLQKSLSTLRPSFTVKYMHSNANMKNF 323
           AA T + H E     PPN+R R   L T  K + +LR S  V    +  + +NF
Sbjct: 28  AASTLKPHYEKSLP-PPNIRPRSSRLSTSTKRIQSLRSSLLVNSSFAKNSYRNF 80


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 207 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 109
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 365 TYEPNDDECLNPWRDDTEEEEL 430
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 314 HICIRVHVLHCKTWPQCRQTLLKSSQGADSP 222
           HIC  V  +HCK+  QC Q LL   +   +P
Sbjct: 116 HICRDVDDIHCKSEAQC-QALLNKEESTVAP 145


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 368 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 463
           +  N D+C+N   +  T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 314  HICIRVHVLHCKTWPQCRQTLLK 246
            HI +RV V  C+  P C + LLK
Sbjct: 3390 HIALRVEVYGCRLGPLCNKPLLK 3412


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 427 LFFFSVITPWVETFIIIRFICAIHNKSSFFIKRLVKFFIFAFECMYF 287
           LFF   +T    +F +  FI   +     F K +   F++ F CMYF
Sbjct: 13  LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,688,597
Number of Sequences: 59808
Number of extensions: 343078
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)