Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060318.seq
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    27   8.6  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +2

Query: 236 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 415
           L+N   + + IE+ FY  VH                R  IV G  EP  ++   P  +  
Sbjct: 33  LKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEGL 92

Query: 416 EEEELARAVQNA 451
           E ++LA   + A
Sbjct: 93  EGDQLAELYKAA 104


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 332 EACKVFHICIRVHVLHCKTWPQCRQTLLKSSQGADSPTNIWG*GCHRFCMKAIC 171
           +A +V HI + +     +  PQC+Q    S      P N     C+  C   IC
Sbjct: 174 QAPQVVHIQLEIQQAQAQCQPQCQQQCQSSCTQQQQPANQCNSACNSQCSN-IC 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,064,843
Number of Sequences: 27780
Number of extensions: 246710
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)