Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060318.seq
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    29   2.6  
At4g13020.2 68417.m02032 serine/threonine protein kinase (MHK) i...    27   7.9  
At4g13020.1 68417.m02031 serine/threonine protein kinase (MHK) i...    27   7.9  
At2g26530.1 68415.m03183 expressed protein                             27   7.9  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 186 AEAMASLPPNVRRRIRALRTLQKSLSTLRPSF 281
           ++ + +L PNVR+R+ ALR +Q     L   F
Sbjct: 41  SDVLENLTPNVRKRVDALRDIQSQHDELEAKF 72


>At4g13020.2 68417.m02032 serine/threonine protein kinase (MHK)
           identical to serine/threonine-protein kinase MHK
           [Arabidopsis thaliana] SWISS-PROT:P43294
          Length = 443

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 565 ALXHP*ICGTKSLGYPLHXIHWRLDSLVILLFLTLS 458
           AL HP         YP+H +  RLD++  L  L L+
Sbjct: 285 ALNHPFFSMATQASYPIHDLELRLDNMAALPNLELN 320


>At4g13020.1 68417.m02031 serine/threonine protein kinase (MHK)
           identical to serine/threonine-protein kinase MHK
           [Arabidopsis thaliana] SWISS-PROT:P43294
          Length = 435

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 565 ALXHP*ICGTKSLGYPLHXIHWRLDSLVILLFLTLS 458
           AL HP         YP+H +  RLD++  L  L L+
Sbjct: 277 ALNHPFFSMATQASYPIHDLELRLDNMAALPNLELN 312


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 297 HSNANMKNFTSLFMKNEXXXXXXXXXXXXXNVSTHGVMTLKKKS 428
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,254,734
Number of Sequences: 28952
Number of extensions: 227227
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)