Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060317.seq
(692 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less prot... 25 0.59
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.1
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.1
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.1
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.1
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.1
AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription fa... 22 4.1
EF468474-1|ABR25244.1| 516|Tribolium castaneum methoprene-toler... 22 5.5
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 22 5.5
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 22 5.5
U77974-1|AAB36556.1| 276|Tribolium castaneum transcription fact... 21 7.2
U09586-3|AAC47272.1| 470|Tribolium castaneum integrase protein. 21 9.6
>AF317551-1|AAG39634.1| 312|Tribolium castaneum distal-less
protein.
Length = 312
Score = 25.0 bits (52), Expect = 0.59
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 259 PSPCSSLPEAPTRPRLEESFT-IHLGS 336
PSP +L P RP + S+T HLGS
Sbjct: 65 PSPRGALGAYPFRPMHQNSYTGYHLGS 91
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 119 VPPGIFKSTCKMDITWF 135
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 119 VPPGIFKSTCKMDITWF 135
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 119 VPPGIFKSTCKMDITWF 135
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 119 VPPGIFKSTCKIDITWF 135
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 119 VPPGIFKSTCKMDITWF 135
>AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription
factor protein.
Length = 441
Score = 22.2 bits (45), Expect = 4.1
Identities = 12/48 (25%), Positives = 19/48 (39%)
Frame = +2
Query: 152 QTQRTHHRAWLMATLQEYQTTSALHTPSNSPLGISRRLHAHPYPRLQP 295
QTQ + + +W + Y +A S + A PYP +P
Sbjct: 226 QTQYSQYGSWFLPHQPIYPAVTATVQLSTCTRTTLKNNRASPYPMQRP 273
>EF468474-1|ABR25244.1| 516|Tribolium castaneum methoprene-tolerant
protein.
Length = 516
Score = 21.8 bits (44), Expect = 5.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 262 SPCSSLPEAPTRPRLEE 312
SP SSLP P R ++ E
Sbjct: 480 SPMSSLPPYPNRTQITE 496
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 21.8 bits (44), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 143 ALCQTQRTHHRAWLMATLQEYQTTSALHTPSNSPLGISRRL 265
AL + R + MA ++E + AL N+P+GI R+
Sbjct: 177 ALLRMDRDISYSQRMARVEEVISDLALSKCQNTPIGILGRI 217
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 21.8 bits (44), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 143 ALCQTQRTHHRAWLMATLQEYQTTSALHTPSNSPLGISRRL 265
AL + R + MA ++E + AL N+P+GI R+
Sbjct: 177 ALLRMDRDISYSQRMARVEEVISDLALSKCQNTPIGILGRI 217
>U77974-1|AAB36556.1| 276|Tribolium castaneum transcription factor
homolog protein.
Length = 276
Score = 21.4 bits (43), Expect = 7.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 209 TTSALHTPSNSPLGISRRLHAHPYP 283
T+ LH P P+ HPYP
Sbjct: 156 TSLPLHYPPPPPVYTHHYARYHPYP 180
>U09586-3|AAC47272.1| 470|Tribolium castaneum integrase protein.
Length = 470
Score = 21.0 bits (42), Expect = 9.6
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 239 SCLVCAKLMWSGTPAMSPLT 180
SC +C K S P PLT
Sbjct: 171 SCDLCQKTKSSNRPHQGPLT 190
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,515
Number of Sequences: 336
Number of extensions: 3249
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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