Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060317.seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    27   1.9  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   1.9  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   4.5  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    26   4.5  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    26   4.5  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 251 ISRRLHAHPYPRLQPDLVLKKASPYTSEVNSNRRTTF 361
           +S+ L  HP+        ++ A PY S +NSN  TT+
Sbjct: 147 VSKSLVRHPHRLKMLPFGIQSAHPYISSLNSNYPTTW 183


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 272 HPYPRLQPDLVLKKASPYTSEVNSNRRTTFALSLWTCSTCAMLIMTTLQNRR 427
           HP P    +++ +    +  EV+SN +TT  L  W CS C+        + R
Sbjct: 120 HPLPLTDGEVLHR----WECEVDSNNKTTIDLKYWYCS-CSQFSYNAFNSSR 166


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +1

Query: 115 FRPMGISAGRLVSNAKNT----SQSMVNGDIAGVPDHISFAHTKQLSAGYISP 261
           ++ +G++AG+  S A       S  + NG + G+ DHIS   T +  AG +SP
Sbjct: 305 YQIIGMAAGKSYSVAWTDTDIYSWGLNNGQL-GISDHISVVSTPRRVAGLLSP 356


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 194 LQEYQTTSALHTPSNSPLGISRRLHAHPYPR 286
           L++ QTT    TP +   G ++  H+H  PR
Sbjct: 401 LRKKQTTKVSGTPKSKHAGSTQEWHSHTTPR 431


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   TRQTEEMEEKVRLLNTSTTEVEINELAT 88
           T    ++E K+   NTS TE+E+ E  T
Sbjct: 160 TFDKSKLESKIITFNTSITEIEVTEHGT 187


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 292 TRPRLEESFTIHLGSQLKQTHNIRIV---AMDLLDL 390
           TR   + +FT+H+G+ L+ +  + I+   A  +LDL
Sbjct: 190 TRENFKRAFTLHIGTLLEHSEKVAILCGYAKKILDL 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,613
Number of Sequences: 5004
Number of extensions: 53408
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)