Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060317.seq
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550     30   2.0  
08_01_0766 - 7401775-7402107,7402734-7402880,7403008-7403034           29   3.5  
02_05_0876 - 32399066-32399920                                         29   4.6  
03_05_0308 - 22977542-22978174,22978202-22978387                       28   6.1  
02_02_0404 + 9876703-9877314,9877599-9877838,9877951-9878073,987...    28   6.1  

>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
          Length = 204

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +3

Query: 255 LAVSMLIPTRGSNPTSS*RKLHHTPRKSTQTDAQHSHCRYGPARPVQC*S*QPYRIVASP 434
           L V +  P+  S P SS  +   +PR    T A        P+ P    S Q  R+ + P
Sbjct: 21  LTVFITPPSPASTPRSS--RPSESPRSGFSTPATAPRTAASPSPPSPAPSPQQQRVASPP 78

Query: 435 PNFPI 449
           P  P+
Sbjct: 79  PTIPV 83


>08_01_0766 - 7401775-7402107,7402734-7402880,7403008-7403034
          Length = 168

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +2

Query: 149 CQTQRTHHRAWLMATLQEYQTTSALHTPSNSPLGISRRLHAHPYPRLQP 295
           C   R H R W  A    +   +A  T SN P G+ R      Y R  P
Sbjct: 104 CDVARGHRRTWPQAMSLAWGVRAAESTASNKP-GVGRGSEGRGYRRRAP 151


>02_05_0876 - 32399066-32399920
          Length = 284

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 14  TEEMEEKVRLLNTSTTEVEINE-LATQQFEEQALVSGRWGSQLDALCQTQRTHH 172
           TE ++E  +    + + V + + L+    EE   + G+W  QLD+  QTQ   H
Sbjct: 212 TEMLDEYWKTDGRALSSVSLAKGLSLLGTEEARFIEGKWRRQLDSEIQTQMRRH 265


>03_05_0308 - 22977542-22978174,22978202-22978387
          Length = 272

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +2

Query: 11  QTEEMEEKVRLLNTSTTEVEINELATQQFEEQALVSGRWGSQLDALCQTQRT---HHRAW 181
           + ++ + ++  L T  T++ + +L  ++ E QA     WGS++D+L   Q +   + R  
Sbjct: 22  EIDDQQRRLGELETEVTDLTVQQLQLEE-EHQA-----WGSEIDSLKFQQLSDQYNDRRG 75

Query: 182 LMATLQEYQTTSALH 226
           +M TL+E    S  H
Sbjct: 76  MMDTLEEQLRKSQEH 90


>02_02_0404 +
           9876703-9877314,9877599-9877838,9877951-9878073,
           9878195-9878374
          Length = 384

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 304 DEVGLEPRVGMSMETARYTQRRVAWCV 224
           D  G++PR   S+E+A Y Q +  W V
Sbjct: 88  DRFGIQPRYDTSVESATYDQGKKHWAV 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,981,295
Number of Sequences: 37544
Number of extensions: 382631
Number of successful extensions: 1125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)