Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060317.seq
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 42 6e-04
SB_35763| Best HMM Match : DUF651 (HMM E-Value=0.26) 30 1.5
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11) 29 3.6
SB_234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_16686| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09) 28 8.3
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 28 8.3
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/60 (25%), Positives = 36/60 (60%)
Frame = +2
Query: 8 RQTEEMEEKVRLLNTSTTEVEINELATQQFEEQALVSGRWGSQLDALCQTQRTHHRAWLM 187
+ +++EE + + + T+ +++ LAT+Q E+ ++ W S+L L + Q+ +R W++
Sbjct: 173 KHRKKLEEAISNIGLTNTDRDVSNLATKQCEDTQMLETYWSSELSQLQEMQKREYREWVV 232
>SB_35763| Best HMM Match : DUF651 (HMM E-Value=0.26)
Length = 436
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 32 KVRLLNTSTTEVEINELATQQFEEQALVSGRWGSQLDALCQTQRTHHR----AWLMATLQ 199
+VR T +++E T +F +Q V G W S+ DAL +T +R W ++
Sbjct: 290 EVRQKLDDVTNKDLDEAETVKFAKQ--VEGMWSSRSDALSRTILQKYRQLVNRWRRCLIE 347
Query: 200 EYQTTSA 220
EY + A
Sbjct: 348 EYTSKDA 354
>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
Length = 1552
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 301 RLEESFTIHLGSQLKQTHNIRIVAMDLLDLCNVDHDNPTESSRRLQTSLSLYSSELSAV 477
R+E + +QL Q H +R++A LL L + D TE + L ++L ++ S LS V
Sbjct: 489 RIEHCYHGLSSAQLLQVHELRLLAHALLILSSQRCDTRTE--KNLGSTLQVWQSFLSRV 545
>SB_234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 350 RTTFALSLWTCSTCAMLIMTTLQNRRVASKL 442
+ TFA S+ +C++CA ++ Q +R+ KL
Sbjct: 4 KKTFARSIKSCASCAKTLLLVAQRQRLHEKL 34
>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1528
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 170 HRAWLMATLQEYQT--TSALHTPSNSPLGISRRLHAHPYPRLQPDLVLKKASPYTSEVNS 343
H + + L +Y T TS +H + R + HP R + +++L YT+ V +
Sbjct: 1014 HTSTHILPLPQYSTRDTSRIHRDESQLTVCHGRDNKHPLTRNKANILLPNTCSYTARVTT 1073
Query: 344 NR-RTTFALSLWTCSTCAMLIMTT 412
+R R A C +++T
Sbjct: 1074 SRIRVGMATDFKRNPMCGQRVVST 1097
>SB_16686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 127 GISAGRLVSNAKNTSQSMVNGDIAGVPDHISFAHTKQLSAGYISPSPCSSLPEAPTRPRL 306
G+ A R+V+ A+ S I+G+ + + T Q+S+ + + + C+S+ T+
Sbjct: 60 GLFAPRIVNIARCMGSSGSYSKISGILRNAKYIQTMQVSSPFGNSTQCNSIFNGNTKNSW 119
Query: 307 EESFTIHLGS 336
T HL S
Sbjct: 120 IIGSTRHLSS 129
>SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)
Length = 584
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 80 LATQQFEEQALVSGRWGSQLDALCQTQRTHHRAWLMATLQEYQTTSALHTPSNSPLGI 253
+A+ + + L + +Q L Q THH AWL + L+TP S L I
Sbjct: 62 IASHRVTKYPLKTDTIANQPSGLVQMY-THHHAWLQFAALTLSLANTLNTPVQSGLNI 118
>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = +2
Query: 5 TRQTEEMEEKVRLLNTSTTEVEINELATQQFEEQALVSGRWGSQLDALCQTQRTHHRAWL 184
T+QT ++K TS+T+ N T ++ + + +Q QT T +
Sbjct: 351 TQQTTNTQQKTNTQLTSSTQHTTNTQLTSSTQQTSSMQPTTDTQ-----QTTNTQQTSNT 405
Query: 185 MATLQEYQTTSALHTPSNSPLGISR 259
T QTTS HT G S+
Sbjct: 406 QQTSNTQQTTSMQHTTKTKHKGNSQ 430
>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 1242
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +1
Query: 289 PTRPRLEESFTIHLGSQLKQTHNIRIVAMDLLDLCNVDHDNPTESSRRLQTSLSLYSSEL 468
P +P +++ + L + HN+ A+DL++ NV N + R++ + ++
Sbjct: 1075 PNKPAADQARNVVDTGDLNRLHNVASQAIDLINAENVGFTNAVATLNRIKDNTDDFNGLQ 1134
Query: 469 SAVI 480
+ VI
Sbjct: 1135 TIVI 1138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,662,807
Number of Sequences: 59808
Number of extensions: 434947
Number of successful extensions: 1306
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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