Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060317.seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical pr...    50   1e-06
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    30   1.8  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    30   1.8  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    30   1.8  
AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to ye...    30   1.8  
Z78539-2|CAB01729.2|  410|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z46828-7|CAA86860.1|  311|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL132949-8|CAB61079.1|  471|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z68104-5|CAA92114.2|  102|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF303263-1|AAG50221.1|  102|Caenorhabditis elegans XM26 protein.       27   9.6  

>Z81051-9|CAD21703.1|  531|Caenorhabditis elegans Hypothetical
           protein C55A6.10 protein.
          Length = 531

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = +1

Query: 304 LEESFTIHLGSQLKQTHNIRIVAMD-LLDLCNVDHDNPTESSRRLQTSLSLYSSELS 471
           + ESFTI++GSQLK  HN+ +V +D L DLC     + T SS RL+ +  LYS  LS
Sbjct: 264 VNESFTIYIGSQLKSMHNVCLVTVDRLTDLCQTLEGDWTTSS-RLEMATKLYSRNLS 319


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/97 (24%), Positives = 40/97 (41%)
 Frame = +1

Query: 154 NAKNTSQSMVNGDIAGVPDHISFAHTKQLSAGYISPSPCSSLPEAPTRPRLEESFTIHLG 333
           N+ N    ++ G ++G+P   S  + K +S     P P  S  + P +P+L      HLG
Sbjct: 42  NSSNGGDQLLLG-VSGIPASSSRENVKSIST-LPPPPPALSYHQTPQQPQLLHHHNNHLG 99

Query: 334 SQLKQTHNIRIVAMDLLDLCNVDHDNPTESSRRLQTS 444
            Q    H I  +        + D D+    S   ++S
Sbjct: 100 YQ-NGIHQITSINSAASSCSSPDGDSAFGDSSSTESS 135


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/97 (24%), Positives = 40/97 (41%)
 Frame = +1

Query: 154 NAKNTSQSMVNGDIAGVPDHISFAHTKQLSAGYISPSPCSSLPEAPTRPRLEESFTIHLG 333
           N+ N    ++ G ++G+P   S  + K +S     P P  S  + P +P+L      HLG
Sbjct: 59  NSSNGGDQLLLG-VSGIPASSSRENVKSIST-LPPPPPALSYHQTPQQPQLLHHHNNHLG 116

Query: 334 SQLKQTHNIRIVAMDLLDLCNVDHDNPTESSRRLQTS 444
            Q    H I  +        + D D+    S   ++S
Sbjct: 117 YQ-NGIHQITSINSAASSCSSPDGDSAFGDSSSTESS 152


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/97 (24%), Positives = 40/97 (41%)
 Frame = +1

Query: 154 NAKNTSQSMVNGDIAGVPDHISFAHTKQLSAGYISPSPCSSLPEAPTRPRLEESFTIHLG 333
           N+ N    ++ G ++G+P   S  + K +S     P P  S  + P +P+L      HLG
Sbjct: 171 NSSNGGDQLLLG-VSGIPASSSRENVKSIST-LPPPPPALSYHQTPQQPQLLHHHNNHLG 228

Query: 334 SQLKQTHNIRIVAMDLLDLCNVDHDNPTESSRRLQTS 444
            Q    H I  +        + D D+    S   ++S
Sbjct: 229 YQ-NGIHQITSINSAASSCSSPDGDSAFGDSSSTESS 264


>AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 4 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 340 LKQTHNIRIVAMDLLD-LCNVDHDNPTESSRRLQT 441
           L + H   I+ +D +D LC+   DN +ES+RR++T
Sbjct: 206 LAREHKPSIIFIDEIDSLCSARSDNESESARRIKT 240


>Z78539-2|CAB01729.2|  410|Caenorhabditis elegans Hypothetical
           protein C31E10.3 protein.
          Length = 410

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 117 ETKACSSNCWVANSLISTSVVEVF 46
           ET+ CSS CW   S ++T  +E++
Sbjct: 26  ETETCSSPCWFNKSEVTTETIELW 49


>Z46828-7|CAA86860.1|  311|Caenorhabditis elegans Hypothetical
           protein R03D7.7 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 110 LVSGRWGSQLDALCQ-TQRTHHRAWLMATLQEYQTTSALHTPSNSPLGISRRLHAH 274
           +VS R  +   + C  T  T+  A    +LQEY   + L  PS  P G +   H +
Sbjct: 146 MVSNRTSTSESSSCSSTDNTYKNAGKFLSLQEYLEQNNLLPPSTMPFGENSGFHGY 201


>Z81147-4|CAB03529.1|  578|Caenorhabditis elegans Hypothetical
           protein T09E11.5 protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 298 PRLEESFTIHLGSQLKQTHNIRIVAMDLLDLCN 396
           PR+++ +T+H+   LK   N+  +   LLD  N
Sbjct: 473 PRVDQPYTLHVAKDLKNGRNVDEIHKQLLDADN 505


>AL132949-8|CAB61079.1|  471|Caenorhabditis elegans Hypothetical
           protein Y53F4B.10 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +2

Query: 281 PRLQPDLVLKKASPYTSEVNSNRRTTFALSLWTCSTCAMLIMTTLQNRRVASKLPYRCIH 460
           P+  P L L    P        RRT    S W   +  +L +  + N  + S+L   CI 
Sbjct: 301 PQAAPGLTLSSLKPGVLYEEVRRRTAHLGSHWEAMSPQVLDLEVVDNGSMLSRLVEECID 360

Query: 461 RN 466
            N
Sbjct: 361 VN 362


>Z68104-5|CAA92114.2|  102|Caenorhabditis elegans Hypothetical
           protein F08B12.4 protein.
          Length = 102

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = +1

Query: 127 GISAGRLVSNAKNTSQSMVNGDIAG--VPDHISFAHTKQLSAGYIS----PSPCSSLPEA 288
           G++ GR V +  + +   ++G   G  VP H + A  + LS G       P P S+  + 
Sbjct: 7   GLTGGRGVPHPNSAAGQALSGKTGGSSVP-HPNSAAGQALSGGMTGGSAVPHPNSAAGQE 65

Query: 289 PTRPRLEESFTIHLGSQLK 345
            T   LEE   +  G+Q+K
Sbjct: 66  LTNKNLEEKSVLEGGTQVK 84


>Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical
           protein K01B6.1 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 119 GRWGSQLDALCQTQRTHHRAWLMATLQEYQTTSALHTP 232
           GR GSQ  +L   + T  +  L+ATLQ++Q   A   P
Sbjct: 252 GRRGSQASSLPSRRNTVSQNDLLATLQQHQQQQAAFHP 289


>AF303263-1|AAG50221.1|  102|Caenorhabditis elegans XM26 protein.
          Length = 102

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = +1

Query: 127 GISAGRLVSNAKNTSQSMVNGDIAG--VPDHISFAHTKQLSAGYIS----PSPCSSLPEA 288
           G++ GR V +  + +   ++G   G  VP H + A  + LS G       P P S+  + 
Sbjct: 7   GLTGGRGVPHPNSAAGQALSGKTGGSSVP-HPNSAAGQALSGGMTGGSAVPHPNSAAGQE 65

Query: 289 PTRPRLEESFTIHLGSQLK 345
            T   LEE   +  G+Q+K
Sbjct: 66  LTNKNLEEKSVLEGGTQVK 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,000,714
Number of Sequences: 27780
Number of extensions: 309048
Number of successful extensions: 976
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)