Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060317.seq
(692 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 1.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 22 6.4
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 8.4
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 24.2 bits (50), Expect = 1.2
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +2
Query: 167 HHRAWLMATLQEYQTTSALHTPSNSPLGISRRLHAHPYPRLQP 295
HH AT +T H+ + + I H HP+P P
Sbjct: 431 HHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETP 473
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 139 VPPGIFKSTCKIDITWF 155
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK DV W+
Sbjct: 102 VPPGIFKSTCKMDVAWF 118
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 102 VPPGIFKSTCKIDIAWF 118
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 102 VPPGIFKSTCKIDITWF 118
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 102 VPPGIFKSTCKMDIAWF 118
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 102 VPPGIFKSTCKIDITWF 118
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 170 VPPGIFKSTCKIDITWF 186
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 170 VPPGIFKSTCKIDITWF 186
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = -3
Query: 252 IPSGELLGVCKADVVWY 202
+P G CK D+ W+
Sbjct: 102 VPPGIFGSTCKIDIAWF 118
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.8 bits (44), Expect = 6.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 20 EMEEKVRLLNTSTTEVEINELATQQFEEQ 106
E + V + TTE + NE+ T QF Q
Sbjct: 400 EKRQSVPANDLLTTEKDNNEIVTAQFLNQ 428
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.4 bits (43), Expect = 8.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 167 HHRAWLMATLQEYQTTSALHTPSNSPLGISRRL 265
HHR WL Q + S GIS RL
Sbjct: 2 HHRMWLQQIFILLQMIHLIAWASLENTGISDRL 34
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,465
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 27
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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