Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060317.seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g31990.1 68416.m04051 hypothetical protein similar to putativ...    31   0.55 
At2g07630.1 68415.m00881 hypothetical protein                          30   1.3  
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    30   1.3  
At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger) fa...    29   2.2  
At1g14560.1 68414.m01731 mitochondrial substrate carrier family ...    29   3.9  
At4g01780.1 68417.m00233 XH/XS domain-containing protein contain...    28   6.8  
At4g00640.1 68417.m00088 hypothetical protein                          27   8.9  
At1g76210.1 68414.m08850 expressed protein contains Pfam profile...    27   8.9  

>At3g31990.1 68416.m04051 hypothetical protein similar to putative
           replication protein A1 GB:AAD32756 from [Arabidopsis
           thaliana]
          Length = 450

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 142 RLVSNAKNTSQSMVNGDIAGVPDHISFAHTKQLSAGYISPSPCSSLPEAPT 294
           R +SNA NTSQ ++N DI  + +         L+   I   P S + E PT
Sbjct: 153 RSISNAFNTSQILINTDIPEILEFKDALPKDGLALTLIESKPKSEVAELPT 203


>At2g07630.1 68415.m00881 hypothetical protein 
          Length = 458

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 142 RLVSNAKNTSQSMVNGDIAGVPDHISFAHTKQLSAGYISPSPCSSLPEAPT 294
           R +SNA NTSQ ++N D+  + +         L+   I   P S + E PT
Sbjct: 180 RSISNAFNTSQILINPDLPEILEFKDALPKDCLALTLIESKPKSKIDEFPT 230


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +1

Query: 241 SAGYISPSPCSSLPEAPTRPRLEESFTIHLGSQLKQTHNIRIVAMDL----LDLCNVDHD 408
           +A  +   P SSL      P + ES  + L +Q+   HN+R V  DL    L    V+  
Sbjct: 35  AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLR-VCRDLTHRSLGYAYVNFA 93

Query: 409 NPTESSRRLQT 441
           NP ++SR +++
Sbjct: 94  NPEDASRAMES 104


>At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 345

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
 Frame = +2

Query: 8   RQTEEMEEKVRLLNTSTTEVEINELATQQF--EEQALVSGRWGSQLDALCQTQRTHHRAW 181
           R T ++ E+V+    S   +  + +   Q     Q   SG  GS+     Q ++TH RA 
Sbjct: 242 RFTLQLPEEVQRQLVSLNLIRRSHIVLPQAVSSRQGYRSGSVGSERGGFSQGRQTHRRAL 301

Query: 182 LMATLQEYQTTS--ALHTPSNSPLGISRRLHAHPYPRLQPD 298
            M+    +QT S  ++H  ++      +      + RL P+
Sbjct: 302 SMSFSFSFQTASVRSIHDMNDQAQAKDKYFGERSFERLMPE 342


>At1g14560.1 68414.m01731 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 331

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 197 QEYQTTSALHTPSNSPLGISRRLHAHPYPRLQPDLVLKKASPYTSEVNSNR-RTTF 361
           +E+Q +  +H P  +  G+  +   +P   ++  + ++   P TSE N+ R + TF
Sbjct: 221 EEHQNSVRMHLPCGALAGLFGQTITYPLDVVRRQMQVENLQPMTSEGNNKRYKNTF 276


>At4g01780.1 68417.m00233 XH/XS domain-containing protein contains
           Pfam profiles PF03469: XH domain, PF03468: XS domain
          Length = 456

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 8   RQTEEMEEKVRLLNTSTTEVEINELATQQFEEQALVSGRWGSQLDA 145
           RQ EE+ EK+  L     +V+  EL  +Q + Q  V     S  DA
Sbjct: 225 RQKEELHEKIIRLERQIDQVQAIELEVEQLKGQLNVMKHMASDGDA 270


>At4g00640.1 68417.m00088 hypothetical protein 
          Length = 425

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 23  MEEKVRLLNTSTTEVEINELATQQFEEQA 109
           +EE   LLN +T E+E+  L +  FEE+A
Sbjct: 143 LEELRDLLNKATKELEVASLNSTMFEEKA 171


>At1g76210.1 68414.m08850 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 226

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 298 PRLEESFTIHLGSQLKQTHNIRIVAMDLLDLCNVDHDNPTESSRRLQ-TSLSLYSSELSA 474
           P+  ES +     Q K T  +   ++ +LD+CNV  D  T     LQ   L+L  +E S 
Sbjct: 24  PKTRESLSQQ--GQEKWTEQVSEASLRMLDICNVSKDVMTLVKHSLQDLQLTLRGNESSD 81

Query: 475 V 477
           V
Sbjct: 82  V 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,997
Number of Sequences: 28952
Number of extensions: 293802
Number of successful extensions: 860
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)