Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060316.seq
         (463 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    27   0.11 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    27   0.11 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    27   0.11 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   2.4  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   2.4  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   2.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    20   9.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   9.7  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 216 DKHFTERIKKDFFNKYFARVRXTIVACVKFINE 314
           +K  TE  K+  FNKY  R R   +A    +NE
Sbjct: 262 NKQLTELEKEFHFNKYLTRARRIEIASALQLNE 294


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 216 DKHFTERIKKDFFNKYFARVRXTIVACVKFINE 314
           +K  TE  K+  FNKY  R R   +A    +NE
Sbjct: 51  NKQLTELEKEFHFNKYLTRARRIEIASALQLNE 83


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 216 DKHFTERIKKDFFNKYFARVRXTIVACVKFINE 314
           +K  TE  K+  FNKY  R R   +A    +NE
Sbjct: 51  NKQLTELEKEFHFNKYLTRARRIEIASALQLNE 83


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 166 MAVAWKYSQFYFHKEYAINI 225
           MA+AW Y+  Y    +A +I
Sbjct: 131 MAIAWPYAAVYTDPAFAASI 150


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +2

Query: 11  TLRVLYDAFKIVSNESN----NGSLLKISC 88
           TL  +Y  F+I +NE+N    N  L+ I C
Sbjct: 66  TLLSVYSLFRIATNENNSLVINKRLIFIEC 95


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +2

Query: 11  TLRVLYDAFKIVSNESN----NGSLLKISC 88
           TL  +Y  F+I +NE+N    N  L+ I C
Sbjct: 66  TLLSVYSLFRIATNENNSLVINKRLIFIEC 95


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 356 FEMLTKMWLVSQPNSXILEIKVDPNAIGQ 442
           +E + K    SQPN    +    P+AIG+
Sbjct: 124 YEWIKKTSYQSQPNPEPADFADAPDAIGK 152


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 356 FEMLTKMWLVSQPNSXILEIKVDPNAIGQ 442
           +E + K    SQPN    +    P+AIG+
Sbjct: 124 YEWIKKTSYQSQPNPEPADFADAPDAIGK 152


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 205 KEYAINISQSELRRTFLINILRX*DXQL 288
           +E+A N+  S LRR  +   LR  + Q+
Sbjct: 134 REFASNMYLSRLRRIEIATCLRLSEKQV 161


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 146 GGKLNVXWPSLGSI 187
           GGKL V W +L S+
Sbjct: 653 GGKLPVRWMALESL 666


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,867
Number of Sequences: 336
Number of extensions: 2160
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10616413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)