Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060316.seq
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   1.4  
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    25   4.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   4.3  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   9.8  

>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 223 CLSRILCGSKTANTSKRRPXYVKFTTEMIKKIVTSLCGERF-LCQPTRYF*KRTIVGFV* 47
           CL +IL  S   N SK+     +     +K+I   + G    LC PT+   +  I   + 
Sbjct: 488 CLQKILEASADRNESKQDAKK-REALYALKRIYPEVKGRIIDLCTPTQKKYESAIAAALG 546

Query: 46  NNFKSVI*HTQCIS 5
            NF +++  TQ ++
Sbjct: 547 KNFDAIVVETQAVA 560


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 163 YVKFTTEMIKKIVTSLCGERFLCQPTRYF*KRTIVG 56
           Y+ F    I +IV+    E+++    +YF + TI+G
Sbjct: 9   YISFEKTEIGQIVSEAPAEKYVSFQKKYFNRLTIIG 44


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 131 NRDVSMRGTLSVPAYTIFLKENHCWI 54
           N  V + GT +V  Y + + +NH W+
Sbjct: 213 NDFVEVPGTSAVQKYRVTMSDNHVWL 238


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 114 AGNAFCASLHDIFKREPLLDSFETILK-ASYSTRNV 10
           AGN   A+  DI + +PL+ S E   +  +Y  +N+
Sbjct: 527 AGNKHDANYDDIIELDPLIGSLENARRIVNYFKKNI 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,039
Number of Sequences: 5004
Number of extensions: 36450
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)