Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060316.seq
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0043 + 14071285-14071324,14071347-14071446,14071549-140716...    28   4.2  
05_03_0489 - 14662378-14664957                                         27   7.3  

>09_04_0043 +
           14071285-14071324,14071347-14071446,14071549-14071650,
           14072253-14072532
          Length = 173

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
 Frame = +3

Query: 90  GWHRKRSPHRDVTIFFIIS--VVNLTXYGRRLEVFAVLLPQRIRDKHFTERIK-----KD 248
           GW   R  HR ++ FF++S   VN      R ++ A +  +   + +  ER K     + 
Sbjct: 15  GWAGVRGEHRHISTFFLVSDYAVN-NDIAVRCDILASMRTKCFGENYLVERGKIANCLEY 73

Query: 249 FFNKYFARVRXTIVA 293
           + N Y  RVR  + A
Sbjct: 74  YRNGYHCRVRFLLFA 88


>05_03_0489 - 14662378-14664957
          Length = 859

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 187 SQFYFHKEYAINISQSELRRTF 252
           S  YF +E+++N++ S L+ TF
Sbjct: 129 SSAYFFREFSVNVTSSSLKLTF 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,432
Number of Sequences: 37544
Number of extensions: 197968
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)