Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060316.seq
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12199| Best HMM Match : FF (HMM E-Value=4.6)                        30   1.1  
SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)                 29   1.4  
SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)         27   10.0 
SB_8799| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                 27   10.0 

>SB_12199| Best HMM Match : FF (HMM E-Value=4.6)
          Length = 193

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 144 SVVNL-TXYGRRLEVFAVLLPQRI-RDKHFTERIKKDFFNKYFAR 272
           S+ NL T YG+  E    L   ++  D +F ER++K+ FN+Y ++
Sbjct: 65  SLKNLFTLYGKAKETSKQLSEYKMGSDSNFLERLRKNLFNEYLSK 109


>SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)
          Length = 375

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 229 VKCLSRILCGSKTANTSKRRPXYVKFTTE 143
           ++CL+RILC  K +   KRR  Y+  ++E
Sbjct: 302 LRCLTRILCCGKRSKEGKRRCRYLTTSSE 330


>SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 432 AFGSTLISKXXELG*LTNHILVNISNENT*NLI 334
           A GS L S    LG + NH+ + + ++ T NL+
Sbjct: 4   AIGSQLFSPFRALGYIANHVPLAVQSQGTENLV 36


>SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)
          Length = 863

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 376 HFGQHFERKYVKFNKSGRKIFSL 308
           H   H+ERKYV  +K G KI++L
Sbjct: 546 HLKAHYERKYVHVDK-GHKIWTL 567


>SB_8799| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 334

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 143 FGGKLNVXWPSLGSIRSFTSTKNTR*TFHRAN*EG 247
           FG K    W  L +I S TST+  R  F   + EG
Sbjct: 184 FGNKEGEFWLGLDNIHSMTSTRRYRVRFDMEDFEG 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,642
Number of Sequences: 59808
Number of extensions: 249922
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)