Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060316.seq
         (463 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095032-1|AAM11360.1|  676|Drosophila melanogaster LD18186p pro...    39   0.003
AE013599-3409|AAF46858.4|  676|Drosophila melanogaster CG12489-P...    39   0.003
BT010124-1|AAQ22593.1|  594|Drosophila melanogaster AT11375p pro...    33   0.25 

>AY095032-1|AAM11360.1|  676|Drosophila melanogaster LD18186p
           protein.
          Length = 676

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 374 MW-LVSQPNSXILEIKVDPNAIGQECLEKVC 463
           MW +V+ PN     +K DP A GQECLEKVC
Sbjct: 1   MWCIVNLPNGTQQAVKWDPKANGQECLEKVC 31


>AE013599-3409|AAF46858.4|  676|Drosophila melanogaster CG12489-PA
           protein.
          Length = 676

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 374 MW-LVSQPNSXILEIKVDPNAIGQECLEKVC 463
           MW +V+ PN     +K DP A GQECLEKVC
Sbjct: 1   MWCIVNLPNGTQQAVKWDPKANGQECLEKVC 31


>BT010124-1|AAQ22593.1|  594|Drosophila melanogaster AT11375p
           protein.
          Length = 594

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = -1

Query: 379 PHFGQHFERK-YVKFNKSGRKIFSLMNLTHATIVXLTRA-KYLLKKSFLIRSVKCLSRIL 206
           P + ++F R   ++       +F +   T   +V + R  K L  ++ + R  K +  ++
Sbjct: 285 PMYKEYFHRNPQIEARMRDANLFRIQYQTRRNMVSILRTIKVLRGRNDIKRLRKFVEEVM 344

Query: 205 CGSKTANTSKRRPXYVKFTTEMIKKIVTSLCGERFLCQPTR 83
                  T++  P   +FT E+   +  SLC E +   PTR
Sbjct: 345 GSYVVIKTNRLMPWKAEFTNEVYNNLALSLC-EGYRLPPTR 384


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,274,712
Number of Sequences: 53049
Number of extensions: 352509
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1539014778
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)