Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060316.seq
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical p...    27   8.6  
AC024881-3|AAK71413.1|  306|Caenorhabditis elegans Serpentine re...    27   8.6  

>Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 78  KYRVGWHRKRSPHRDVTI---FFIISVVNLTXYGRRLEVFAVLLPQRI 212
           +Y VG HR+     D+ I   F+   +VN T +G    V+  L+P R+
Sbjct: 420 QYFVGTHREDYHTSDMDIMDTFYSKMIVNFTKFGSPSPVWEPLVPSRM 467


>Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 78  KYRVGWHRKRSPHRDVTI---FFIISVVNLTXYGRRLEVFAVLLPQRI 212
           +Y VG HR+     D+ I   F+   +VN T +G    V+  L+P R+
Sbjct: 420 QYFVGTHREDYHTSDMDIMDTFYSKMIVNFTKFGSPSPVWEPLVPSRM 467


>U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical
           protein F46F11.8 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 202 GSKTANTSKRRPXYVKFTTEMIKKIVTSLCGERF 101
           GS T+   KR+   V   TE + KI+  LC   F
Sbjct: 240 GSMTSLPEKRQKLTVSLLTETLLKIICKLCNACF 273


>AC024881-3|AAK71413.1|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein6 protein.
          Length = 306

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 286 IVXLTRAKYLLKKSFLIRSVKCLSRILC 203
           I  + R K L  KS ++++++CL  I+C
Sbjct: 32  IYLIARRKKLQTKSSILQAIQCLCHIIC 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,356,520
Number of Sequences: 27780
Number of extensions: 197137
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)