Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060316.seq
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05250.1 68414.m00531 peroxidase, putative similar to peroxid...    28   3.5  
At1g05240.1 68414.m00530 peroxidase, putative similar to peroxid...    28   3.5  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    27   4.7  
At5g34450.1 68418.m04030 replication protein-related weak simila...    27   6.2  
At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containi...    27   8.2  
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi...    27   8.2  

>At1g05250.1 68414.m00531 peroxidase, putative similar to
           peroxidase; peroxidase ATP11a [Arabidopsis thaliana]
           gi|1546688|emb|CAA67334
          Length = 325

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 285 IVACVKFINENILRPDLLNFTYFRSKC*PKCG*SVNLILXSWKSRWTQMRLVKSALRRY 461
           +V  +  +  ++  P LL+  Y+RSKC PK    V  +   + SR  Q  L    LR +
Sbjct: 9   LVVLLSVVGVSVAIPQLLDLDYYRSKC-PKAEEIVRGVTVQYVSR--QKTLAAKLLRMH 64


>At1g05240.1 68414.m00530 peroxidase, putative similar to
           peroxidase; peroxidase ATP11a [Arabidopsis thaliana]
           gi|1546688|emb|CAA67334
          Length = 325

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 285 IVACVKFINENILRPDLLNFTYFRSKC*PKCG*SVNLILXSWKSRWTQMRLVKSALRRY 461
           +V  +  +  ++  P LL+  Y+RSKC PK    V  +   + SR  Q  L    LR +
Sbjct: 9   LVVLLSVVGVSVAIPQLLDLDYYRSKC-PKAEEIVRGVTVQYVSR--QKTLAAKLLRMH 64


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 244 FLIRSVKCLSRILCGSKTANTSKRRP 167
           F    V+CL   LCGS +ANT  + P
Sbjct: 626 FSSEHVQCLLNQLCGSTSANTQLKAP 651


>At5g34450.1 68418.m04030 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 163

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 308 NEFNTRYNCXSHXRKIFIKKVLLNSLCEMF 219
           ++F TRY   S+ R  +IK V + S CE F
Sbjct: 57  SDFATRYLYTSYYRHKYIKCVAVRSSCEEF 86


>At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1064

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 344 YVFSFEMLTKMWLVSQPNSXILEIKVDPNAIGQECLEKVC 463
           YV   +MLT+  L+S+    I E+ + P+A+    L   C
Sbjct: 832 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSAC 871


>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1229

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 111 PHRDVTIFFII--SVVNLTXYGRRLEVFAVLLPQRIRDKHFT 230
           P R+V I  ++  S VN   YG  ++VF  +    +R  H+T
Sbjct: 101 PERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYT 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,547,934
Number of Sequences: 28952
Number of extensions: 173490
Number of successful extensions: 362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)