Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060315.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    66   3e-12
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    26   5.9  
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    26   5.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.8  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 27/75 (36%), Positives = 49/75 (65%)
 Frame = +2

Query: 248 NKSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQ 427
           N  I+ESIR    DL   + D G   SAL+ Y++ R+YCT+   +  + L ++++S+++ 
Sbjct: 104 NNLIRESIRAAQLDLASFFADVGQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIG 163

Query: 428 NWAHVLNYVSKAEAT 472
           N++HVL + S+A++T
Sbjct: 164 NYSHVLAFGSRAKST 178



 Score = 29.9 bits (64), Expect = 0.36
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +3

Query: 63  TYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKN 242
           TYN+ LY +L ++  +   +  L            D  WVES T      LE+L  +LK 
Sbjct: 54  TYNLELYQSLFEEFQDCFENEQL------------DVEWVESVTFHRKQNLEQLRRELKA 101

Query: 243 YKTN 254
           YK N
Sbjct: 102 YKNN 105


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/19 (42%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 678 QVRKVHHRWQHYY-CSLIL 625
           ++ K HH W +Y+ CS+I+
Sbjct: 107 EINKTHHTWGNYFRCSMIV 125


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 180 VESKTKKAAIKLEKLDTDLKNYKTNQSKKVSEEA 281
           VES T   ++   K + D  N++T  S+   EEA
Sbjct: 99  VESSTSSLSLLQSKEEDDSSNWETEDSESAVEEA 132


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 228 YLAFPVLWQLFLF-LILPKXXXXXXXXXXXXYQAVLLMPLLLRVF 97
           + +FP+L  LF F L +                A+L +PLLLRVF
Sbjct: 147 FSSFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVF 191


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +3

Query: 3   ARGPSLRLEALKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWV 182
           A    +R + +  ++   ++ Y +   H+   +L   +A +G  D    +DI  LD  WV
Sbjct: 382 ALATDVRFQTVAFSLLQDLSHYGLRPNHSTLYELIRLIAYSGKLDYM--KDI--LDNFWV 437

Query: 183 ESKTKKAAIKLEKL 224
             K   + +K+E++
Sbjct: 438 RQKLLPSILKVEQI 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,060
Number of Sequences: 5004
Number of extensions: 47168
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)