Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060315.seq
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91... 97 1e-20
11_06_0210 + 21296782-21296909,21297135-21298844,21299127-212994... 29 2.6
05_04_0453 + 21380962-21382320 29 3.5
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 29 4.6
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 29 4.6
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 28 6.0
03_02_0163 - 6056959-6058989 28 6.0
02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087 28 6.0
06_03_1486 + 30470838-30472460 28 8.0
02_04_0535 - 23727004-23727082,23727558-23727796,23727915-237283... 28 8.0
>03_01_0115 -
915142-915321,915397-915631,916301-916386,916474-916590,
917271-917591,918386-918772
Length = 441
Score = 97.1 bits (231), Expect = 1e-20
Identities = 55/118 (46%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Frame = +2
Query: 257 IKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWA 436
IKESIR G++D+GD + G L+ A K Y R RDYCT+ KH+V MC+NV+ VS+ L +
Sbjct: 133 IKESIRMGYNDIGDFFYAHGHLSDAFKSYIRTRDYCTTSKHIVQMCMNVILVSIELGQFP 192
Query: 437 HVLNYVSKAEATPD-FNEIPGKDSNSQF*LV*NVQQD*PSWATKKYKSAAKHFLGCQH 607
HV NYVSKAE TPD + I + L ATKKYK AA+ F+ H
Sbjct: 193 HVSNYVSKAEQTPDTLDPIIVAKLRAAAGLA--------YLATKKYKLAARKFVETGH 242
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 165 LDTIWVESKTKKAAIKLEKLDTDLKNYKTNQSKK 266
LD W +S ++A + EKL+++L Y+TN K+
Sbjct: 102 LDQAWTDSVNRRAEQRKEKLESELNGYRTNLIKE 135
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 621 YPELMSSNNVAIYGGLCALATF 686
Y E+++ +VA+YG LCALA+F
Sbjct: 248 YSEVIAPQDVAVYGALCALASF 269
>11_06_0210 +
21296782-21296909,21297135-21298844,21299127-21299418,
21300210-21300519,21300890-21301110
Length = 886
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 263 ESIRRGH--DDLGDHYLDCGDLTSALKCYSRA 352
+ +R+G ++LG Y+DCG L A +CY A
Sbjct: 704 DRLRKGQALNNLGSVYVDCGKLDLAAECYINA 735
>05_04_0453 + 21380962-21382320
Length = 452
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 72 RYMWS*HRIWPFSKLPIAMTDLVP 1
R++ + HR P ++LP+A TDLVP
Sbjct: 60 RWLDTGHRTCPATRLPLASTDLVP 83
>10_08_0838 -
20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 290 LGDHYLDCGDLTSALKCYSRA 352
LG HY GD A KCY RA
Sbjct: 711 LGHHYALAGDAQRAAKCYQRA 731
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 248 NKSIKESIRRG--HDDLGDHYLDCGDLTSALKCYSRA 352
N +++R+G ++++G Y+DC L A +CY+ A
Sbjct: 778 NSCASDNLRKGQAYNNMGSIYVDCDLLDEAAECYNIA 814
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 IPVLDTIWVESKTKKAAIKL-EKLDTDLKNYKTNQSKKVSEEAMM 287
IP+LD VE K ++L E D D++ Y NQ+ + ++ MM
Sbjct: 542 IPILDQSVVEKNVKPCLVELSEDPDVDVR-YYANQALQACDQIMM 585
>03_02_0163 - 6056959-6058989
Length = 676
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/91 (26%), Positives = 41/91 (45%)
Frame = +2
Query: 197 KSCHKTGKARY*FEKL*NKSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGK 376
++C GKA FEK+ + + + + D Y GD +AL+ Y RAR +
Sbjct: 195 RACGMPGKAVEWFEKMPDFGCSPDMLT-YSAVIDAYGRAGDAETALRLYDRAR--AEKWQ 251
Query: 377 HLVMMCLNVVKVSVYLQNWAHVLNYVSKAEA 469
++C V++V N+ LN + +A
Sbjct: 252 LDPVICATVIRVHSSSGNFDGALNVFEEMKA 282
>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
Length = 790
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +2
Query: 314 GDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWAH----VLNYVSKAEATPDF 481
G++ S+ K ++C +HLV +C +++ L+ + H VL Y+ F
Sbjct: 462 GNVASSQKLLLDRSEFCARLEHLVHVCHDLLHGKTDLEKFVHEVCLVLEYIINQYKNISF 521
Query: 482 NEIPGKDSNS 511
E P +N+
Sbjct: 522 QEQPDTVNNN 531
>06_03_1486 + 30470838-30472460
Length = 540
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 617 TMINAGSPKNVLQQIYTFSLPSSANPAAHFKRVKIDCCCLFRE 489
T+ AG + + + T+SLP ++ A H +R KI C + R+
Sbjct: 234 TLALAGEEEPI-PSVATYSLPPASAAATHKRRHKICACTMVRD 275
>02_04_0535 -
23727004-23727082,23727558-23727796,23727915-23728359,
23728528-23728583
Length = 272
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 653 GNIITAH*FWVFTMINAGSPKNVLQQIYTFS 561
G+ T+H FW ++ PK+V+ Q+YT S
Sbjct: 71 GDGATSH-FWDLAWMHGRHPKDVMPQVYTIS 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,274,847
Number of Sequences: 37544
Number of extensions: 286575
Number of successful extensions: 733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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