Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060315.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   5e-09
SB_47984| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)                       30   1.5  
SB_37524| Best HMM Match : p450 (HMM E-Value=0)                        30   2.0  
SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)                  29   2.7  
SB_37363| Best HMM Match : TPR_2 (HMM E-Value=0)                       29   3.5  
SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0)                        29   4.7  
SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  

>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = +3

Query: 591 FWAASIDHCEYPELMSSNNVAIYGGLCALATF 686
           F  AS DHC+ PEL+SSNNVAIYGGLCALA+F
Sbjct: 27  FLQASFDHCDCPELLSSNNVAIYGGLCALASF 58


>SB_47984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 24/38 (63%), Positives = 32/38 (84%)
 Frame = +3

Query: 153 DIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNQSKK 266
           + P ++T WVE+ +KKAA+KLEKLDTDLKNYK+N  K+
Sbjct: 2   ETPSVETTWVETTSKKAALKLEKLDTDLKNYKSNSIKE 39


>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1161

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 257 IKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLV 385
           ++++++   ++LG  Y   GD   A KCY +  D C     +V
Sbjct: 448 LQQNVQPNLEELGLLYAKSGDFNEASKCYEKLLDLCLKNGDVV 490


>SB_37524| Best HMM Match : p450 (HMM E-Value=0)
          Length = 362

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = +3

Query: 33  LKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVES 188
           L  A+ Y++  +N ++   LHK++ + +     P ++  +++PVL+    E+
Sbjct: 177 LGWAVIYLL--HNPDVQERLHKEIDDVIGRDAFPQLSKRKELPVLEAFTAET 226


>SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)
          Length = 1208

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 9    GPSLRLEALKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVES 188
            G       L  AI+Y++  +N  +   LHK++ + +     P ++  ++IPVL+    E+
Sbjct: 1069 GSETTTTTLSWAIAYLL--HNPGVQARLHKEIDQVIGRDVSPKLSQRKNIPVLEAFTAET 1126


>SB_37363| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 936

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 263 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLV 385
           E+++    +LG  Y   GD   A KCY +  D C     +V
Sbjct: 571 ENVQPNLGELGVLYTKSGDFNEANKCYEKQLDLCLKNGDVV 611


>SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 263 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLV 385
           E+++    +LG  Y   GD   A KCY +  D C     +V
Sbjct: 622 ENVQPNLGELGVLYTKSGDFNEANKCYEKQLDLCLKNGDVV 662


>SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1307

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 263 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYC 364
           E+++    +LG  Y   GD   A KCY +  D C
Sbjct: 614 ENVQPNLAELGGLYTKSGDFNEANKCYEKLLDSC 647


>SB_5761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 887

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = +2

Query: 263 ESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYC--------TSGKHLVMMCLNVVKVSV 418
           E+++    + G  Y   GD   A KCY +  D C         +  HL+M+C   + V+ 
Sbjct: 224 ENVQPNLAERGGLYTKSGDFNEANKCYEKLLDSCLKNGDVVGQADTHLMMVCCTCLNVTT 283

Query: 419 YLQNWA 436
            ++ W+
Sbjct: 284 -IRLWS 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,942,357
Number of Sequences: 59808
Number of extensions: 334782
Number of successful extensions: 859
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)