Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060315.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    58   6e-09
Z81109-6|CAB03253.2|  179|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    28   7.2  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    28   7.2  
AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = +2

Query: 248 NKSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRA-RDYCTSGKHLVMMCLNVVKVSVYL 424
           ++ +KES RR  +DL  HY+  G +  A++ YSR  RDYCT  KH + M +N ++V++  
Sbjct: 190 DEGVKESTRRAMEDLFQHYMMAGKIDEAIRLYSRGIRDYCTQLKHSINMWINWMEVAICA 249

Query: 425 QNW 433
            +W
Sbjct: 250 NDW 252



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
 Frame = +3

Query: 12  PSLRLEALKMAISYVMT-TYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVES 188
           P LR +A    I+Y+   T ++  Y     +L   +A     +   +  IP+ D  W+E 
Sbjct: 110 PILRADAYISLINYLKEHTTDITHYVAFFNELESELARKEFKNRQLNFQIPLRDQKWIEE 169

Query: 189 KTKKAAIKLEKLDTDLKNYKTNQSKKVSEEAM 284
                    ++L  + K +K    K+ +  AM
Sbjct: 170 NGATWQSTTDQLQAEYKRHKDEGVKESTRRAM 201


>Z81109-6|CAB03253.2|  179|Caenorhabditis elegans Hypothetical
           protein R10D12.12 protein.
          Length = 179

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 144 GSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNQSKKVSEEAMMI 290
           G+ +  V+D ++ E+   + ++K + LD D   YK + S+ ++E  ++I
Sbjct: 43  GNFNQDVIDRVFGETSGDEGSVKCDGLDIDYYRYKPSLSEDMAEALIVI 91


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 296 DHYLDCGDLT-SALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWAHVLNYVSKA-EA 469
           +++L CG L    +K     +++ T  K L       +++   + NWA VL+Y S   E 
Sbjct: 554 NYFLHCGTLRIQGMKMSKSLKNFITIRKALEDYTPRQLRLLFLMHNWADVLDYSSSTMER 613

Query: 470 TPDFNEI 490
              F +I
Sbjct: 614 ALQFEKI 620


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 296 DHYLDCGDLT-SALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWAHVLNYVSKA-EA 469
           +++L CG L    +K     +++ T  K L       +++   + NWA VL+Y S   E 
Sbjct: 553 NYFLHCGTLRIQGMKMSKSLKNFITIRKALEDYTPRQLRLLFLMHNWADVLDYSSSTMER 612

Query: 470 TPDFNEI 490
              F +I
Sbjct: 613 ALQFEKI 619


>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 108 EAVASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNQSKKVSEEAM 284
           EAV +  L D  GS  +    ++  E K +   ++ +  D D+K YK+ +   +SEE M
Sbjct: 318 EAVVAQLLRDSKGSLKLVDTSSLLPELKRETGVVQWKVFDRDMKLYKSLED--ISEEKM 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,743
Number of Sequences: 27780
Number of extensions: 263212
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)