Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060315.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.89 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.89 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   4.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 450 MYLKLKRPQTLMKFPEKTATVNFNSFK 530
           MYL+LK  +  M +   T  +N NS K
Sbjct: 485 MYLRLKARRACMNYERFTYKININSDK 511



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 9   GPSLRLEALKMAISYVMTTYNVNL 80
           G  LRL+A +  ++Y   TY +N+
Sbjct: 484 GMYLRLKARRACMNYERFTYKINI 507


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 450 MYLKLKRPQTLMKFPEKTATVNFNSFK 530
           MYL+LK  +  M +   T  +N NS K
Sbjct: 485 MYLRLKARRACMNYERFTYKININSDK 511



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 9   GPSLRLEALKMAISYVMTTYNVNL 80
           G  LRL+A +  ++Y   TY +N+
Sbjct: 484 GMYLRLKARRACMNYERFTYKINI 507


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 686 KCSKCAKSTIDGNIITAH 633
           KC KC+ S ++ +++ +H
Sbjct: 18  KCEKCSYSCVNKSMLNSH 35


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 225 LAFPVLWQLFLFLILP 178
           + FP+L+ LF+ L  P
Sbjct: 368 IGFPILFMLFIILYWP 383


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 368 SGKHLVMMCLNVVKVSVYLQNWAHVLNY 451
           SG+  +++   V    + ++N +HV+NY
Sbjct: 499 SGRMSILVATAVAARGLDIKNVSHVINY 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,301
Number of Sequences: 438
Number of extensions: 2945
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)