Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060315.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CS...    89   2e-18
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR...    31   0.54 
At2g20290.1 68415.m02370 myosin, putative similar to myosin (GI:...    29   2.9  
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    27   8.8  

>At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CSN
           complex subunit 1 (CSN1) / COP11 protein (COP11) / FUSCA
           protein (FUS6) FUSCA6, COP11, CSN1; identical to FUS6
           GI:432446, SP:P45432 from [Arabidopsis thaliana];
           contains Pfam profile PF01399: PCI domain; identical to
           cDNA CSN complex subunit 1 (CSN1) GI:18056652
          Length = 441

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 38/74 (51%), Positives = 51/74 (68%)
 Frame = +2

Query: 257 IKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWA 436
           IKESIR G++D GD Y  CG L  A K Y R RDYCT+ KH++ MC+N + VS+ +  + 
Sbjct: 134 IKESIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVSIEMGQFT 193

Query: 437 HVLNYVSKAEATPD 478
           HV +YV+KAE  P+
Sbjct: 194 HVTSYVNKAEQNPE 207



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 621 YPELMSSNNVAIYGGLCALATF 686
           Y E+++  ++A YGGLCALA+F
Sbjct: 249 YNEVIAPQDIATYGGLCALASF 270



 Score = 31.1 bits (67), Expect = 0.72
 Identities = 21/84 (25%), Positives = 39/84 (46%)
 Frame = +3

Query: 15  SLRLEALKMAISYVMTTYNVNLYHTLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVESKT 194
           +L+ +AL+MA   +    N  L+  +  K+   +      D+A           W E+  
Sbjct: 64  ALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLA-----------WCEAVD 112

Query: 195 KKAAIKLEKLDTDLKNYKTNQSKK 266
           ++A  K  KL+ +L +Y+TN  K+
Sbjct: 113 RRAEQKKVKLENELSSYRTNLIKE 136


>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1193

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 560 LPSSANPAAHFKRVKIDCCCLFREFH*SLG-SLQL*IHNLEHEPNFEDILK 411
           L  S   A + KR+K+ CC L ++   S+G +  L + +L H  +FE++ K
Sbjct: 684 LTDSIGKATNLKRLKLACCSLLKKLPSSIGDATNLQVLDLFHCESFEELPK 734


>At2g20290.1 68415.m02370 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1493

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
 Frame = +3

Query: 87   TLHKKLSEAVASAGLPDIAGSQDIPVLDTIWVESKTK-----KAAIKLEKLDTDLKNYKT 251
            +L K++  A  +A +  +   +++PV+DT+ +E  T      K+ +   +L  D    K 
Sbjct: 948  SLLKEVEAAKKTAAIVPVV--KEVPVVDTVLMEKLTSENEKLKSLVTSLELKIDETEKKF 1005

Query: 252  NQSKKVSEEAM 284
             ++KK+SEE +
Sbjct: 1006 EETKKISEERL 1016


>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 251 KSIKESIRRGH--DDLGDHYLDCGDLTSALKCYSRA 352
           K   + +R+G   ++LG  Y+DC  L  A  CY+ A
Sbjct: 770 KCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYTNA 805


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,351,234
Number of Sequences: 28952
Number of extensions: 240011
Number of successful extensions: 660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)