Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060314.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.1  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   5.4  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   5.4  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   5.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.4  
AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.       21   7.1  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   9.4  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 20  RGSSAGFKLPPFKNIIHKVLVILSAVCV 103
           RG+   F+LP   N + KVL++   V V
Sbjct: 13  RGTPPKFELPTTHNCLKKVLLLSQIVGV 40


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 488 DLGVAGFYAVQARH 529
           DLGVAGF    A+H
Sbjct: 194 DLGVAGFRVDAAKH 207


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 488 DLGVAGFYAVQARH 529
           DLGVAGF    A+H
Sbjct: 195 DLGVAGFRVDAAKH 208


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 488 DLGVAGFYAVQARH 529
           DLGVAGF    A+H
Sbjct: 195 DLGVAGFRVDAAKH 208


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 106  IITIKMVAGGKQMNVRVTTMD 168
            IIT + V GG   ++RV T D
Sbjct: 988  IITAEEVPGGPPTSIRVETND 1008


>AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.
          Length = 38

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 190 QQTTTGKQLFDQVVKTIGLREVGSSV 267
           Q+T  GK+LF+ +++T  +  V  ++
Sbjct: 5   QRTGLGKRLFEHMLQTESIEPVKMAI 30


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = -2

Query: 681 AEASRGVPATSS*CSAPIPRGTSCVGRSLFEEVNGHW 571
           A+   G P   +  S P  +G   +G +   E  G W
Sbjct: 270 AQHDLGAPVIDAGMSGPYTKGYGVMGFNEICEFTGDW 306


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,615
Number of Sequences: 336
Number of extensions: 3430
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)