Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060314.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1164 - 31413577-31414080,31414435-31414647 38 0.007
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 30 1.5
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 2.6
03_05_0853 - 28245612-28245700,28245788-28245867,28246315-282463... 29 4.5
12_02_0189 + 15165485-15168694 28 6.0
09_04_0280 - 16355060-16355155,16355874-16355903 28 6.0
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 28 6.0
11_01_0665 - 5413561-5413593,5413785-5413907,5414020-5414259,541... 28 7.9
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116 28 7.9
07_01_0927 - 7784564-7784656,7785182-7785225,7785946-7785970,778... 28 7.9
>04_04_1164 - 31413577-31414080,31414435-31414647
Length = 238
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 681 AEASRGVPATSS*CSAPIPRGTSCVGRSLFEEVNGHWPGIPA--PCRAGLCSPCLAWTA* 508
A A+RG PATSS SA +S +G+ +G PA RA C CL +
Sbjct: 131 AAAARGSPATSSSSSASTSSSSSSIGKRHRSPPSGGAVATPASPSMRAAACPSCLTYVLI 190
Query: 507 KPATPRSP 484
A PR P
Sbjct: 191 AEADPRCP 198
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 204 GGRLLDR-ELEFRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCII 61
GG LDR E E ++H R H + H + H H D S++ I+
Sbjct: 2801 GGYDLDRIESEVQLHERKETGHCHAGEEHGHQHHHGHVHDSAVSSVSIV 2849
>12_02_0133 -
14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 157 TTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVGSSVFSTPTPRATSLGSSCIRR*CNKT 336
T + ++ E Q TTG + +V K + + GS+ S+ + LGS R+ CN+
Sbjct: 544 TQVSSKEESKAQHLTTG---YSEVNKQLVAKAPGSTTVSSAEKSSGILGSGAQRKRCNEA 600
Query: 337 SRKRIHCS 360
CS
Sbjct: 601 GHSTQFCS 608
>03_05_0853 -
28245612-28245700,28245788-28245867,28246315-28246395,
28246746-28246796,28246876-28247081,28247360-28247573,
28247689-28247734,28248956-28249025,28249747-28249815
Length = 301
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 482 SGDLGVAGFYAVQARHGEHNPALHGAGIPGQ 574
SGD+G G++ + +G NP +H + PG+
Sbjct: 46 SGDVGALGWWDLFINYGWFNPMIHKSPNPGE 76
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 249 RGWFFG--LQYTDSKGDLTWIKLYKKVMQQDVKKEN 350
+ W G L+Y +SK +L+W K+ K+VM EN
Sbjct: 910 KDWLNGCNLKYYESKLNLSWRKVLKEVMNNKESDEN 945
>09_04_0280 - 16355060-16355155,16355874-16355903
Length = 41
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 616 CPARNGSRASRTGGRNTARCFR 681
C RNG R SRTGG N R +R
Sbjct: 12 CDGRNGRRESRTGGAN-VRLYR 32
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 280 TPRATSLGSSCIRR*CNKTSRKRIHCSSNSEPNSILRMSTMSSYRRSH*NSSI 438
TP+A S SS R + K S S+P + +R ST S R S SS+
Sbjct: 22 TPKAFSASSSARRTPAAAAAGKENSASKPSKPTAAVRWSTSSIPRASRIPSSV 74
>11_01_0665 -
5413561-5413593,5413785-5413907,5414020-5414259,
5414564-5415184
Length = 338
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 553 VQSGIVFSVSGLDRVEASNTEVSGGQYISSDKIAFFT 443
++ G++ G+ +++ ++ E GG+ I D I F T
Sbjct: 281 IKGGVIKVFQGISKIKTNSIEFHGGKQIPFDAIVFAT 317
>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
Length = 886
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 456 ILSDEIYCPPETSVLLASTRSKPDTENTIPLCTGPGFLA 572
++ DE+ P V + S RSK D E + C G A
Sbjct: 618 VILDELCSDPNNVVFIVSGRSKDDLERWLAPCANLGIAA 656
>07_01_0927 -
7784564-7784656,7785182-7785225,7785946-7785970,
7786357-7786497,7786590-7786619,7786686-7786762,
7786816-7786855,7787055-7787122,7787782-7789864
Length = 866
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = -3
Query: 683 SRKHLAVFLPPVRDALLPFLAGHLVLVGHSLRK*TVIGQESRPRAERDCVLRVWLGPRRS 504
+RK A L P R + PF A L+L G + R ++ + + ER VLR W+ RR
Sbjct: 4 ARKAAARLLSP-RASTHPFSAA-LLLRGRAARGGSLEARLATVPHERASVLRFWVRRRRF 61
Query: 503 QQHRGL 486
RG+
Sbjct: 62 HDARGV 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,715,619
Number of Sequences: 37544
Number of extensions: 436019
Number of successful extensions: 1312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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