Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060314.seq
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45073| Best HMM Match : ERM (HMM E-Value=0) 139 2e-33
SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09) 138 5e-33
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26) 50 2e-06
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26) 48 9e-06
SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16) 42 5e-04
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15) 36 0.023
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026) 33 0.28
SB_31348| Best HMM Match : ERM (HMM E-Value=0) 31 0.87
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 30 2.0
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 29 2.7
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 28 6.1
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
Length = 504
Score = 139 bits (337), Expect = 2e-33
Identities = 62/120 (51%), Positives = 86/120 (71%)
Frame = +3
Query: 315 KKVMQQDVKKENPLQFKFRAKFYPEDVDDELIQEITLKLFYLQVKNAILSDEIYCPPETS 494
K VM QDVKKE PLQFKFR KF+PEDV +ELIQE+T K+F+LQ+K AI + +++CPPET+
Sbjct: 3 KAVMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETT 62
Query: 495 VLLASTRSKPDTENTIPLCTGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHREM 674
VLLAS + ++ + +++LLP RV DQH +S+E+W++ I WW+EH M
Sbjct: 63 VLLASYMCQ--AKHGEYTDESAALIKDEKLLPDRVLDQHTLSKEQWDERIILWWKEHGRM 120
>SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09)
Length = 118
Score = 138 bits (333), Expect = 5e-33
Identities = 61/118 (51%), Positives = 85/118 (72%)
Frame = +3
Query: 321 VMQQDVKKENPLQFKFRAKFYPEDVDDELIQEITLKLFYLQVKNAILSDEIYCPPETSVL 500
VM QDVKKE PLQFKFR KF+PEDV +ELIQE+T K+F+LQ+K AI + +++CPPET+VL
Sbjct: 1 VMSQDVKKETPLQFKFRVKFFPEDVAEELIQEVTQKMFFLQIKEAIFTSDVFCPPETTVL 60
Query: 501 LASTRSKPDTENTIPLCTGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHREM 674
LAS + ++ + +++LLP RV DQH +S+E+W++ I WW+EH M
Sbjct: 61 LASYMCQ--AKHGEYTDESAALIKDEKLLPDRVLDQHTLSKEQWDERIILWWKEHGRM 116
>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 56.4 bits (130), Expect = 2e-08
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Frame = +3
Query: 258 FFGLQYTDSK-GDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVDDELIQEITLKLF 434
+FGL+Y D K G W++ + + +Q K PL F F KFYPE+ L ++IT F
Sbjct: 48 YFGLRYIDEKDGQFNWLEGDRSIKRQMGKA--PLHFYFAVKFYPEN-PTTLREDITRYQF 104
Query: 435 YLQVKNAILSDEIYCPPETSVLLASTRSKPDTENTIPLCTGPGFLANDRLLPQRVTDQ 608
LQ++ +L I C LLAS + + + P +L++ + P++ +D+
Sbjct: 105 VLQLREDLLKGRIQCSNPIHALLASYVMQAELGDLHPEEHEVAYLSDLKFFPKQTSDE 162
Score = 35.1 bits (77), Expect = 0.053
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 148 VRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLRE 252
V+V +D++ E I +TT G LFDQV IGL E
Sbjct: 11 VQVAGLDSDYECPIDKTTKGDHLFDQVCDHIGLAE 45
>SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)
Length = 458
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Frame = +3
Query: 216 LRSSC-EDDRPPRGW-FFGLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYP 386
LR C E + PPR +FG+Q T G L+W+++ K + Q +K F+F +FYP
Sbjct: 97 LRRVCIELNIPPRDQGYFGIQSTKWEDGALSWLEMEKDLRSQFLKLTG---FQFAVRFYP 153
Query: 387 EDVDDELIQEITLKLFYLQVKNAILSDEIYCP 482
++D L+ EI+ +L LQVK++I+ + P
Sbjct: 154 RNID--LLSEISRELLCLQVKDSIIRGKFLKP 183
>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
Length = 906
Score = 47.6 bits (108), Expect = 9e-06
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Frame = +3
Query: 258 FFGLQYTDSKGDLTWIKLYKKVMQQ---DVKKENPLQFKFRAKFYPEDVDDELIQEITLK 428
+FGLQY KGD W+ L K V +Q + + KFR K++ + L +EI
Sbjct: 624 YFGLQYR-KKGDDWWLDLAKPVAKQLSNHGRIAAVVTLKFRVKYFVCNAYS-LQEEIARY 681
Query: 429 LFYLQVKNAILSDEIYCPPETSVLLASTRSKPD 527
L+YLQ+K +L+ + C + +V+LAS ++ D
Sbjct: 682 LYYLQLKKNVLAGLLLCDEQAAVVLASYIAQGD 714
>SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 261 FGLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVDDELIQEITLKLFY 437
FGLQYT G L W+ + K++ Q + P F+F KFYP + + + ++ +L
Sbjct: 68 FGLQYTSWEDGALNWLDMSKEIRSQ---RSKPYHFQFAVKFYPRNPRE--LDPVSRELMC 122
Query: 438 LQVKNAILSDEIYCP 482
LQVK++++ + P
Sbjct: 123 LQVKDSLVRGKFLKP 137
>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
Length = 573
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/77 (32%), Positives = 41/77 (53%)
Frame = +3
Query: 366 FRAKFYPEDVDDELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASTRSKPDTENTIP 545
FR K+Y E++ L Q+ T L+YLQ++ +L I+ ET++LLAS + + +
Sbjct: 297 FRVKYYVENIC-LLQQQSTRHLYYLQLRKDVLEGGIFVHEETAMLLASYALQAEVGDYNQ 355
Query: 546 LCTGPGFLANDRLLPQR 596
G + + LPQR
Sbjct: 356 SVHGNDYFVPEHYLPQR 372
>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
Length = 378
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 FFGLQYTD-SKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVDDELIQEITLKLF 434
+FGLQY D + G+ W++L+K + Q +K+ L +F + +P ++ ++ I +
Sbjct: 63 YFGLQYVDRNDGETNWLELHKPIYGQ--QKDKTLSVQFVVRVFP--LNPLRMEPIVQRWI 118
Query: 435 YLQVKNAILSDEIYCPPETSVLLAS 509
LQ+K+ + ++ + LL S
Sbjct: 119 LLQMKDLLSRGKVKVSLQKHALLDS 143
>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
Length = 453
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 258 FFGLQYTDS-KGDLTWIKLYKKVMQQDVKKENPLQFKFRAK 377
+FGL Y + G TW++L K+V+ ++ + +PL F +
Sbjct: 48 YFGLSYAEEGSGAQTWLRLDKRVLDHELPRHDPLILLFAVR 88
>SB_31348| Best HMM Match : ERM (HMM E-Value=0)
Length = 665
Score = 31.1 bits (67), Expect = 0.87
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 594 RVTDQHKMSREEWEQSITNWWQEH 665
+V +Q++M+ WE+ IT+W+ EH
Sbjct: 12 QVIEQYQMTPAMWEERITSWYAEH 35
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 432 FYLQVKNAILSDEIYCPPETSVLLASTRSKPDTENTIPLCTGPGFLANDRLLPQRVTDQ 608
FYLQ++ +L +YC E ++ L + +T + P G F+ + L +RV ++
Sbjct: 426 FYLQLRKDLLDCRLYCHEEAALTLGGLALQAETGDYTPALGGDYFIV-EHYLSRRVLNK 483
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 133 GKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGL 246
G++M + +L+ I+ TT +QL++QV+K IG+
Sbjct: 278 GRRMVSVIVLNGQKLQMMIETNTTTQQLYEQVIKYIGI 315
>SB_18809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 255 WFFGLQYTDSKGDLTWIKLYKK 320
W+FGLQ+ G+L W++ KK
Sbjct: 48 WYFGLQFEYPTGELAWLQFDKK 69
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 190 QQTTTGKQLFDQVVKTIGLRE 252
+Q+ G +LFD VV+T+G+RE
Sbjct: 26 KQSAKGSELFDLVVRTLGVRE 46
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 174 FRVHRRHADVHLFSSGNHFDSYDHTHTADKITSTLCIIFLKGGSLKP 34
F V DVHL +G+ + + D+ ST+C + G S+ P
Sbjct: 935 FTVCESKFDVHLMCAGSSDNFVPKLPSCDRFVSTICCVSASGTSMPP 981
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 258 FFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVDDELIQEITL 425
+FGL+Y D W+ L K V++Q +K E + PED +D + E +
Sbjct: 23 YFGLRYVDDSKQRHWLDLSKSVIKQ-MKSE-------LGDYDPEDQEDNYVSEFRI 70
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Frame = +3
Query: 207 EATLRSSCEDDRPPRGWFFGLQYTDSKGDLTWIKLYKKVMQQ--DVKKENPLQFKFRAKF 380
+ L C++ + +FGL+Y + ++ W+ L V+ Q P + + KF
Sbjct: 24 QEVLDKVCDELKIKEKNYFGLKYCVNDTNV-WLNLRNPVLTQLRPHLPGKPYRLRLEVKF 82
Query: 381 YPEDVDDELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASTRSKPD 527
+ EL QE T FY +KN I + E +V L + ++ +
Sbjct: 83 FV--APKELQQEETRWQFYFCLKNQISEGKFNLTREKAVRLCALMAQSE 129
>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
Length = 822
Score = 28.3 bits (60), Expect = 6.1
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Frame = +3
Query: 288 GDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVDDELIQEITLKLFYLQVKNAILSD 467
G+LTW++L + + VK+ Y ++ ++ I ++ Q +++L D
Sbjct: 2 GNLTWLRLIHPSLSKLVKQR-----------YRTELRSRILASIKPEIS--QALSSLLDD 48
Query: 468 EIYCPPETSVLLASTRS-----KPDT----ENTIPLCTGPG-----FLANDRLLPQRVTD 605
EI+ E ++ +TRS KP + + PLC G FL++ R LP + D
Sbjct: 49 EIHGTEEEKIMRTATRSFTKGLKPRSSTHPDKRCPLCRQAGRPNKHFLSSCRYLPDQ--D 106
Query: 606 QHKMSR 623
+H M++
Sbjct: 107 RHYMAK 112
>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 28.3 bits (60), Expect = 6.1
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +3
Query: 267 LQYTDSKGDLT-WIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVDDELIQ--EITLKLFY 437
++ D KG W++LY+K Q+ ++ + KFRAK D+ ++Q E K
Sbjct: 394 MENVDKKGFFQKWLELYEKKYQEWSEENFDSKDKFRAKH--NDLYQSIVQQAEKNYKTNE 451
Query: 438 LQVKNAILSDEIYCPPETSVLLASTRSKPDTENTIPLCTG 557
L + N +S+ S+ L T TI + G
Sbjct: 452 LPMINNYVSEASLNQASMSIALVFAAEAYHTRGTIRVVVG 491
>SB_48108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 130 GGKQMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIG 243
GGK N RVT+ +E E +QQ + + +KT G
Sbjct: 26 GGKPGNTRVTSSKSEFEKLVQQLESATVRIESRLKTPG 63
>SB_35524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 252 GWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENP 353
G + +Y++ K D TW +Y+K + + V ++ P
Sbjct: 22 GSVYARKYSEFKDDQTWTSMYEKNLGRKVSEQPP 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,234,129
Number of Sequences: 59808
Number of extensions: 472521
Number of successful extensions: 1349
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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