Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060314.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.67 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.89 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.7  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   8.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 456  ILSDEIYCPPETSVLLASTRSKPDTENTIPLCTGPGFLANDRLLPQRVTDQH 611
            +L + ++   ETS +L  TR++       PL  GP + A     P+   D H
Sbjct: 1431 LLINNVFYEDETSCMLDKTRAQTFDGKDYPLRLGPCWHAVMTTYPRINPDNH 1482


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 331 KTSRKRIHCSSNSEPNSILRMSTMSSYRRS 420
           +TSRKR  CS   E  S    ++   YR +
Sbjct: 266 RTSRKRYSCSREREQKSYKNENSYRKYRET 295


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 202 TGKQLFDQVVKTIGLREVGSSVFSTPTPRATSLGSSCIRR*CNKTSRKRIHCSSNSEPNS 381
           TG++ FD +   +   +   +  S PT   TS+  SC R+  N  +   +     + P+S
Sbjct: 65  TGEEPFDTLDTFLRELQADLAEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSS 124


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 328 NKTSRKRIHCSSNSEPNSILRMS 396
           N+  +    CS  S+PN+++++S
Sbjct: 95  NEADQLLAECSPISDPNALIKIS 117


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 204 GGRLLDRELEFRVHRRHADVH 142
           G R  +  L  R+HR    VH
Sbjct: 295 GSRFDEERLTLRIHRGRGSVH 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,386
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)