Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060313.seq
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.77 
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   4.1  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   4.1  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   9.5  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 672 PIFNSRSHYLFPAKLNTSLTNLT 604
           P+++   HY F    NT+L NLT
Sbjct: 440 PVYHKDPHYGFHNVTNTTLQNLT 462


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 95  PIYTYYFITMYVY 57
           P Y+Y+F   Y+Y
Sbjct: 83  PFYSYFFYLSYIY 95


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory
          receptor candidate 14 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 95 PIYTYYFITMYVY 57
          P Y+Y+F   Y+Y
Sbjct: 39 PFYSYFFYLSYIY 51


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 278 PQTSLVNVKSSDLKTVSTNNVFV 346
           P T  VN K S     +T+N F+
Sbjct: 125 PDTFFVNEKQSYFHIATTSNEFI 147


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,087
Number of Sequences: 336
Number of extensions: 2896
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)