Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060313.seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.5  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 272  LHPQTSLVNVKSSDLKTVSTNNV--FVHFNSCQWAAH 376
            LHPQ+SL  V  SD+     N V  FV+ N     AH
Sbjct: 1020 LHPQSSLYCVLDSDISAGKNNRVLKFVYDNLASCLAH 1056


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 681  NKLPIFNSRSHYLFPAKLNTSLTNLTMFLQLHISPLPSVA**FCNIQHFI 532
            NK P+ + R +YL  + +  S+TN T       S LPS     CN+Q+F+
Sbjct: 1708 NKRPLLSGRIYYLISSFVAISMTNKT-------SGLPSSL--ICNLQNFL 1748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,653
Number of Sequences: 5004
Number of extensions: 45460
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)