Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060313.seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19986| Best HMM Match : bZIP_2 (HMM E-Value=5.7e-17)                28   6.2  
SB_2807| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  

>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = -3

Query: 557  NFAIFNISLAV---TFLSTTLTVQQVHMWAQLEVLIQCIYICI*KVPSLRISYSLYMLLS 387
            N  + N+ +A+   TF        Q+  + + E++++ +   +   P +  ++ + M + 
Sbjct: 1166 NILLLNLLIAIFNNTFSDVQANSNQIWKFRRFELVMEYVERPVLVPPLIFFNHVIEMFVG 1225

Query: 386  IQDSVQPIGRN*NEQKHYLLKLFLNQRISH*LRKFED 276
            I   ++   +    +  + LKLFLN+     L  FE+
Sbjct: 1226 ISQMIRSARKGSKSRADHRLKLFLNKEELQKLMMFEE 1262


>SB_19986| Best HMM Match : bZIP_2 (HMM E-Value=5.7e-17)
          Length = 278

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 374 HYPELREACTKNNLFLEKEPFKYKYKYIESVLQV 475
           H  E R+   +NN+ + K  FK K K+IE+  +V
Sbjct: 195 HSEEYRQKRERNNVAVRKSRFKSKQKFIETQSRV 228


>SB_2807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 684 LNKLPIFNSRSHYLFPAKLNTSL 616
           L+KLP+ N+ + YL+P K  TSL
Sbjct: 30  LSKLPLLNALTVYLYPQKALTSL 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,018
Number of Sequences: 59808
Number of extensions: 298744
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)