Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060313.seq
         (688 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3432|AAF56219.2|  267|Drosophila melanogaster CG33108-P...    56   3e-08
AY071230-1|AAL48852.1|  123|Drosophila melanogaster RE26840p pro...    56   5e-08
AY052144-1|AAK93568.1|  947|Drosophila melanogaster SD10334p pro...    29   7.9  
AE014297-693|AAF54185.1|  947|Drosophila melanogaster CG2708-PA ...    29   7.9  

>AE014297-3432|AAF56219.2|  267|Drosophila melanogaster CG33108-PA
           protein.
          Length = 267

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
 Frame = +2

Query: 353 NSCQWAAHYPELREACTKNNLFLEKEPFKYKYKYIESVLQVGPTCGLVALSM*LIEKLLP 532
           + C WA  YPE+++ C  + +     P   +Y  + S++QVGPTCGLVALSM L      
Sbjct: 38  DECTWACEYPEVQKGCYLSRVCQYTPPKHCQYYSVNSIVQVGPTCGLVALSMLLGGSPTA 97

Query: 533 ---MKC*ILQNYQATLGNGEMCSCKNMVKLVKEVFNLAGNK*CDLEL 664
              +K  I Q Y  TL NGE+ S + + +L ++  ++ G   C L +
Sbjct: 98  DDLLKDAIDQEY--TL-NGELFSAQYLFELTRK--HMPGPAACQLHV 139


>AY071230-1|AAL48852.1|  123|Drosophila melanogaster RE26840p
           protein.
          Length = 123

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 23/52 (44%), Positives = 34/52 (65%)
 Frame = +2

Query: 353 NSCQWAAHYPELREACTKNNLFLEKEPFKYKYKYIESVLQVGPTCGLVALSM 508
           + C WA  YPE+++ C  +++     P   +Y  + S++QVGPTCGLVALSM
Sbjct: 38  DECTWACEYPEVQKGCYLSSVCQYTPPKHCQYYSVNSIVQVGPTCGLVALSM 89


>AY052144-1|AAK93568.1|  947|Drosophila melanogaster SD10334p
           protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 344 VHFNSCQWAAHYPELREACTKNNLFLEKEPFKYK 445
           VH+ + +WA    E+R  C   ++  E E +KY+
Sbjct: 315 VHYTALEWAERLVEIRGLCRLLDVCSELEDYKYE 348


>AE014297-693|AAF54185.1|  947|Drosophila melanogaster CG2708-PA
           protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 344 VHFNSCQWAAHYPELREACTKNNLFLEKEPFKYK 445
           VH+ + +WA    E+R  C   ++  E E +KY+
Sbjct: 315 VHYTALEWAERLVEIRGLCRLLDVCSELEDYKYE 348


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,059,962
Number of Sequences: 53049
Number of extensions: 441394
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)