Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060313.seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83230-9|CAB05748.1|  248|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z83111-3|CAB05536.1|  361|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81097-18|CAB03165.2|  232|Caenorhabditis elegans Hypothetical p...    28   5.4  

>Z83230-9|CAB05748.1|  248|Caenorhabditis elegans Hypothetical
           protein F56A8.8 protein.
          Length = 248

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = -2

Query: 678 KLPIFNSRSHYLFPAKLNTSLTNLTMFLQLHISPLPSVA**FCNIQHFIGSNFSINYIDS 499
           K+PI    S+YL        +   T+F +  +  +P V     N+  F   N  I+Y+  
Sbjct: 165 KIPIL-PHSYYLTLFVYQKRVEESTLFNKSLVRMIPEVLQSMLNVGTFGNQNIGIDYVTD 223

Query: 498 ATSPHVGPT*STDSMYLYL 442
            T  H   + +TD+   +L
Sbjct: 224 CTREHYKKSVNTDAGIQFL 242


>Z83111-3|CAB05536.1|  361|Caenorhabditis elegans Hypothetical
           protein F57G8.4 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 536 SLAVTFLSTTLTVQQV-HMWAQLEVLIQCIYICI*KVPSLRISYSLYMLLSI 384
           SL + F +   TV    +++A +E++I C +I I   P +RIS    +LL I
Sbjct: 6   SLQLFFSNLVATVGAYEYIFATIELMINCFHIFILSRPRMRISSMNSILLGI 57


>Z81097-18|CAB03165.2|  232|Caenorhabditis elegans Hypothetical
           protein K07A1.3 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 470 QVGPTCGLVALSM*LIEKLLPMKC*ILQNYQATLG---NGEMCSCKNMVKLVKE 622
           Q GPTCGLVA+SM L    +      +      +G    GEM S +++  L  E
Sbjct: 41  QKGPTCGLVAISMCLEHFGIKTNPETILEKAKEMGFTKQGEMYSAESLASLTNE 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,050,923
Number of Sequences: 27780
Number of extensions: 251064
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)