Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060313.seq
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.3  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 111 LHYIRANLYILFYYYVCL 58
           LHY+ A LYILF +   L
Sbjct: 47  LHYLLALLYILFTFLALL 64


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 22/84 (26%), Positives = 29/84 (34%)
 Frame = +2

Query: 377 YPELREACTKNNLFLEKEPFKYKYKYIESVLQVGPTCGLVALSM*LIEKLLPMKC*ILQN 556
           YP +R+  T   L       K KY      + +   CG+V  +     K     C   QN
Sbjct: 25  YPSIRQGTTSYCLGCGDSCHKCKYG-----IAMSSACGIVQCA-----KGPDELCGGPQN 74

Query: 557 YQATLGNGEMCSCKNMVKLVKEVF 628
           Y      G  CSC   +    E F
Sbjct: 75  YLGICAEGMQCSCNKCIGCSAEKF 98


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 278 PQTSLVNVKSSDLKTVSTNNVFVHFN 355
           P T  VN K S     +T+N F+  +
Sbjct: 96  PDTFFVNEKQSYFHIATTSNEFIRIH 121


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 278 PQTSLVNVKSSDLKTVSTNNVFVHFN 355
           P T  VN K S     +T+N F+  +
Sbjct: 96  PDTFFVNEKQSYFHIATTSNEFIRIH 121


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 278 PQTSLVNVKSSDLKTVSTNNVFVHFN 355
           P T  VN K S     +T+N F+  +
Sbjct: 35  PDTFFVNEKQSYFHIATTSNEFIRIH 60


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 413 LFLEKEPFKYKYKYIESVLQVGPTCGL 493
           L L   P    Y +IE  LQ GP   L
Sbjct: 415 LQLGNAPPMLLYSFIEQTLQPGPAVSL 441


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 413 LFLEKEPFKYKYKYIESVLQVGPTCGL 493
           L L   P    Y +IE  LQ GP   L
Sbjct: 415 LQLGNAPPMLLYSFIEQTLQPGPAVSL 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,273
Number of Sequences: 438
Number of extensions: 3590
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)